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Status |
Public on Apr 12, 2024 |
Title |
Rapid PTEFb-dependent transcriptional reorganization underpins the glioma adaptive response to radiotherapy |
Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing Other
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
38816355 |
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Submission date |
Mar 21, 2023 |
Last update date |
Jun 12, 2024 |
Contact name |
Etienne Danis |
E-mail(s) |
ETIENNE.DANIS@CUANSCHUTZ.EDU
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Organization name |
University of Colorado, Denver - Anschutz Medical Campus
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Department |
Cancer Center
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Street address |
13001 E 17th Pl
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City |
AURORA |
State/province |
CO |
ZIP/Postal code |
80045 |
Country |
USA |
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Platforms (1) |
GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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Samples (51)
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GSM7108222 |
ATAC-seq, DIPG4, DMSO, replicate 1 |
GSM7108223 |
ATAC-seq, DIPG4, DMSO, replicate 2 |
GSM7108224 |
ATAC-seq, DIPG4, DMSO, radiation, replicate 1 |
GSM7108225 |
ATAC-seq, DIPG4, DMSO, radiation, replicate 2 |
GSM7108226 |
ATAC-seq, DIPG4, AZD4573, radiation, replicate 1 |
GSM7108227 |
ATAC-seq, DIPG4, AZD4573, radiation, replicate 2 |
GSM7108292 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, DMSO, replicate 1 |
GSM7108293 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, DMSO, replicate 2 |
GSM7108294 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, DMSO, replicate 3 |
GSM7108295 |
IgG, DIPG4, DMSO, replicate 1 |
GSM7108296 |
IgG, DIPG4, DMSO, replicate 2 |
GSM7108297 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, DMSO_with_radiation, replicate 1 |
GSM7108298 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, DMSO_with_radiation, replicate 2 |
GSM7108299 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, DMSO_with_radiation, replicate 3 |
GSM7108300 |
IgG, DIPG4, DMSO_with_radiation, replicate 1 |
GSM7108301 |
IgG, DIPG4, DMSO_with_radiation, replicate 2 |
GSM7108302 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, AZD4573_with_radiation, replicate 1 |
GSM7108303 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, AZD4573_with_radiation, replicate 2 |
GSM7108304 |
phosphorylated_RNA_Polymerase_ II_Ser2, DIPG4, AZD4573_with_radiation, replicate 3 |
GSM7108305 |
IgG, DIPG4, AZD4573_with_radiation, replicate 1 |
GSM7108306 |
IgG, DIPG4, AZD4573_with_radiation, replicate 2 |
GSM7108307 |
Histone_3_K27_acetylation, DIPG4, DMSO, replicate 1 |
GSM7108308 |
Histone_3_K27_acetylation, DIPG4, DMSO, replicate 2 |
GSM7108309 |
Histone_3_K27_acetylation, DIPG4, DMSO, radiation, replicate 1 |
GSM7108310 |
Histone_3_K27_acetylation, DIPG4, DMSO, radiation, replicate 2 |
GSM7108311 |
Histone_3_K27_acetylation, DIPG4, AZD4573, radiation, replicate 1 |
GSM7108312 |
Histone_3_K27_acetylation, DIPG4, AZD4573, radiation, replicate 2 |
GSM7991645 |
Brd4, DIPG4, DMSO, replicate 1 |
GSM7991646 |
Brd4, DIPG4, DMSO, replicate 2 |
GSM7991647 |
ENL, DIPG4, DMSO, replicate 1 |
GSM7991649 |
ENL, DIPG4, DMSO, replicate 2 |
GSM7991650 |
IgG, DIPG4, DMSO, replicate 3 |
GSM7991651 |
Brd4, DIPG4, DMSO_with_radiation, replicate 1 |
GSM7991652 |
Brd4, DIPG4, DMSO_with_radiation, replicate 2 |
GSM7991653 |
ENL, DIPG4, DMSO_with_radiation, replicate 1 |
GSM7991654 |
ENL, DIPG4, DMSO_with_radiation, replicate 2 |
GSM7991655 |
IgG, DIPG4, DMSO_with_radiation, replicate 3 |
GSM7991657 |
Brd4, DIPG4, AZD_with_radiation, replicate 1 |
GSM7991658 |
Brd4, DIPG4, AZD_with_radiation, replicate 2 |
GSM7991659 |
ENL, DIPG4, AZD_with_radiation, replicate 1 |
GSM7991660 |
ENL, DIPG4, AZD_with_radiation, replicate 2 |
GSM7991661 |
IgG, DIPG4, AZD_with_radiation, replicate 3 |
GSM8207827 |
DIPG4 cells, DMSO, 6 hours, replicate 1, RNAseq |
GSM8207828 |
DIPG4 cells, DMSO, 6 hours, replicate 2, RNAseq |
GSM8207829 |
DIPG4 cells, DMSO, 6 hours, replicate 3, RNAseq |
GSM8207830 |
DIPG4 cells, DMSO, radiation, 6 hours, replicate 1, RNAseq |
GSM8207831 |
DIPG4 cells, DMSO, radiation, 6 hours, replicate 2, RNAseq |
GSM8207832 |
DIPG4 cells, DMSO, radiation, 6 hours, replicate 3, RNAseq |
GSM8207833 |
DIPG4 cells, AZD4573, radiation, 6 hours, replicate 1, RNAseq |
GSM8207834 |
DIPG4 cells, AZD4573, radiation, 6 hours, replicate 2, RNAseq |
GSM8207835 |
DIPG4 cells, AZD4573, radiation, 6 hours, replicate 3, RNAseq |
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This SuperSeries is composed of the following SubSeries:
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GSE227792 |
Rapid PTEFb-dependent transcriptional reorganization underpins the glioma adaptive response to radiotherapy [ATAC-Seq] |
GSE227795 |
Rapid PTEFb-dependent transcriptional reorganization underpins the glioma adaptive response to radiotherapy [CUT&RUN] |
GSE227796 |
Rapid PTEFb-dependent transcriptional reorganization underpins the glioma adaptive response to radiotherapy [ChIP-Seq] |
GSE263946 |
Rapid PTEFb-dependent transcriptional reorganization underpins the glioma adaptive response to radiotherapy [RNA-seq] |
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Relations |
BioProject |
PRJNA947077 |
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