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Series GSE225975 Query DataSets for GSE225975
Status Public on Apr 24, 2023
Title Direct enzymatic sequencing of 5-methylcytosine at single-base resolution
Organisms Homo sapiens; Cloning vector pUC19; Escherichia phage T4; Escherichia phage Lambda
Experiment type Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 37322153
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 HG010646 Non-destructive epigenetic sequencing with DNA deaminase enzymes UNIVERSITY OF PENNSYLVANIA Rahul Manu Kohli
R01 HG010646 Non-destructive epigenetic sequencing with DNA deaminase enzymes UNIVERSITY OF PENNSYLVANIA Hao Wu
Submission date Feb 23, 2023
Last update date Jul 25, 2023
Contact name Rahul M. Kohli
E-mail(s) kohlilab@gmail.com
Phone 215-573-7523
Organization name University of Pennsylvania
Department Department of Medicine
Lab Rahul M. Kohli
Street address 3610 Hamilton Walk, 502B Johnson Pavilion
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104
Country USA
 
Platforms (3)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL33180 Illumina MiSeq (Escherichia phage Lambda)
GPL33181 Illumina MiSeq (Cloning vector pUC19; Escherichia phage Lambda; Escherichia phage T4)
Samples (35)
GSM7061096 GBM_BS
GSM7061097 GBM_DM
GSM7061103 control lambda phage, unmeth_BS
This SuperSeries is composed of the following SubSeries:
GSE225964 Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [1]
GSE225967 Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [2]
GSE225971 Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [3]
Relations
BioProject PRJNA938125

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225975_RAW.tar 337.8 Mb (http)(custom) TAR (of BAM, TXT)
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