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Status |
Public on Apr 24, 2023 |
Title |
Direct enzymatic sequencing of 5-methylcytosine at single-base resolution |
Organisms |
Homo sapiens; Cloning vector pUC19; Escherichia phage T4; Escherichia phage Lambda |
Experiment type |
Methylation profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
37322153 |
NIH grant(s) |
Grant ID |
Grant title |
Affiliation |
Name |
R01 HG010646 |
Non-destructive epigenetic sequencing with DNA deaminase enzymes |
UNIVERSITY OF PENNSYLVANIA |
Rahul Manu Kohli |
R01 HG010646 |
Non-destructive epigenetic sequencing with DNA deaminase enzymes |
UNIVERSITY OF PENNSYLVANIA |
Hao Wu |
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Submission date |
Feb 23, 2023 |
Last update date |
Jul 25, 2023 |
Contact name |
Rahul M. Kohli |
E-mail(s) |
kohlilab@gmail.com
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Phone |
215-573-7523
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Organization name |
University of Pennsylvania
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Department |
Department of Medicine
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Lab |
Rahul M. Kohli
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Street address |
3610 Hamilton Walk, 502B Johnson Pavilion
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City |
Philadelphia |
State/province |
Pennsylvania |
ZIP/Postal code |
19104 |
Country |
USA |
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Platforms (3) |
GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
GPL33180 |
Illumina MiSeq (Escherichia phage Lambda) |
GPL33181 |
Illumina MiSeq (Cloning vector pUC19; Escherichia phage Lambda; Escherichia phage T4) |
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Samples (35)
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GSM7061104 |
control lambda phage, unmeth_DM |
GSM7061105 |
control lambda phage, mCpG_BS |
GSM7061106 |
control lambda phage, mCpG_DM |
GSM7061107 |
control lambda phage, mGpC_BS |
GSM7061108 |
control lambda phage, mGpC_DM |
GSM7061121 |
control pUC19, lambda phage, and T4-phage, 0_no_deam |
GSM7061122 |
control pUC19, lambda phage, and T4-phage, 0_BS |
GSM7061123 |
control pUC19, lambda phage, and T4-phage, 0_DM |
GSM7061124 |
control pUC19, lambda phage, and T4-phage, 0_TAPS |
GSM7061125 |
control pUC19, lambda phage, and T4-phage, 0_TAPSb |
GSM7061126 |
control pUC19, lambda phage, and T4-phage, 50_mCpG_no_deam |
GSM7061127 |
control pUC19, lambda phage, and T4-phage, 50_mCpG_BS |
GSM7061128 |
control pUC19, lambda phage, and T4-phage, 50_mCpG_DM |
GSM7061129 |
control pUC19, lambda phage, and T4-phage, 50_mCpG_TAPS |
GSM7061130 |
control pUC19, lambda phage, and T4-phage, 50_mCpG_TAPSb |
GSM7061131 |
control pUC19, lambda phage, and T4-phage, 100_mCpG_no_deam |
GSM7061132 |
control pUC19, lambda phage, and T4-phage, 100_mCpG_BS |
GSM7061133 |
control pUC19, lambda phage, and T4-phage, 100_mCpG_DM |
GSM7061134 |
control pUC19, lambda phage, and T4-phage, 100_mCpG_TAPS |
GSM7061135 |
control pUC19, lambda phage, and T4-phage, 100_mCpG_TAPSb |
GSM7061136 |
control pUC19, lambda phage, and T4-phage, 100_mGpC_BS |
GSM7061137 |
control pUC19, lambda phage, and T4-phage, 100_mGpC_DM |
GSM7061138 |
control pUC19, lambda phage, and T4-phage, 100_mGpC_TAPS |
GSM7061139 |
control pUC19, lambda phage, and T4-phage, 100_mGpC_TAPSb |
GSM7061150 |
control pUC19, lambda phage, and T4-phage, no_TET_no_deam |
GSM7061151 |
control pUC19, lambda phage, and T4-phage, TET_no_deam |
GSM7061152 |
control pUC19, lambda phage, and T4-phage, no_TET_borane |
GSM7061153 |
control pUC19, lambda phage, and T4-phage, TET_borane |
GSM7061154 |
control pUC19, lambda phage, and T4-phage, no_TET_A3A |
GSM7061155 |
control pUC19, lambda phage, and T4-phage, TET_A3A |
GSM7061156 |
control pUC19, lambda phage, and T4-phage, no_TET_BS |
GSM7061157 |
control pUC19, lambda phage, and T4-phage, TET_BS |
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This SuperSeries is composed of the following SubSeries:
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GSE225964 |
Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [1] |
GSE225967 |
Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [2] |
GSE225971 |
Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [3] |
GSE225973 |
Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [4] |
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Relations |
BioProject |
PRJNA938125 |
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