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GEO accession:
Series GSE225972
Query DataSets for GSE225972
Status
Public on May 10, 2024
Title
Proteome-scale tagging and functional screening in mammalian cells by ORFtag
Organism
Mus musculus
Experiment type
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://www.nature.com/articles/s41592-024-02339-x
Contributor(s)
Nemčko F
,
Himmelsbach M
,
Loubiere V
,
Yelagandula R
,
Pagani M
,
Fasching N
,
Brennecke J
,
Elling U
,
Stark A
,
Ameres SL
Citation(s)
38969721
Submission date
Feb 23, 2023
Last update date
Jul 11, 2024
Contact name
Alexander Stark
E-mail(s)
stark@starklab.org
Organization name
The Research Institute of Molecular Pathology (IMP)
Lab
Stark Lab
Street address
Campus-Vienna-Biocenter 1
City
Vienna
ZIP/Postal code
1030
Country
Austria
Platforms (3)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
Samples (28)
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GSM7689463
mouse_PTGR_sorted_rep1
GSM7689464
mouse_PTGR_sorted_rep2
GSM7689465
mouse_PTGR_unsorted_rep1
GSM7689466
mouse_PTGR_unsorted_rep2
GSM7689467
mouse_activating_sorted_rep1
GSM7689468
mouse_activating_sorted_rep2
GSM7689469
mouse_activating_unsorted_rep1
GSM7689470
mouse_activating_unsorted_rep2
GSM7689471
mouse_repressor_sorted_rep1
GSM7689472
mouse_repressor_sorted_rep2
GSM7689473
mouse_repressor_unsorted_rep1
GSM7689474
mouse_repressor_unsorted_rep2
GSM7689499
CUTNRUN_Zfp574_aV5_AID_cell_line_rep1
GSM7689500
CUTNRUN_Zfp574_aV5_AID_cell_line_rep2
GSM7689501
CUTNRUN_Zfp574_aV5_parental_ctl_cell_line_rep1
GSM7689502
CUTNRUN_Zfp574_aV5_parental_ctl_cell_line_rep2
GSM7689558
PROseq_Zfp574_0h_AID_ctl_rep1
GSM7689559
PROseq_Zfp574_0h_AID_ctl_rep2
GSM7689560
PROseq_Zfp574_6h_AID_depletion_rep1
GSM7689561
PROseq_Zfp574_6h_AID_depletion_rep2
GSM8260018
mouse_activating_frame+1_sorted
GSM8260019
mouse_activating_frame+2_sorted
GSM8260020
mouse_activating_frame+3_sorted
GSM8260021
mouse_activating_frame+1_unsorted
GSM8260022
mouse_activating_frame+2_unsorted
GSM8260023
mouse_activating_frame+3_unsorted
GSM8260024
RNASeq_activating_sorted
GSM8260025
RNASeq_activating_unsorted
This SuperSeries is composed of the following SubSeries:
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GSE240282
Proteome-scale tagging and functional screening in mammalian cells by ORFtag [ORFtag]
GSE240284
Proteome-scale tagging and functional screening in mammalian cells by ORFtag [Cut & Run]
GSE240285
Proteome-scale tagging and functional screening in mammalian cells by ORFtag [PRO-Seq]
GSE267110
Proteome-scale tagging and functional screening in mammalian cells by ORFtag [frame_specific_screen]
GSE267111
Proteome-scale tagging and functional screening in mammalian cells by ORFtag [RNA-seq]
Relations
BioProject
PRJNA938123
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE225972_RAW.tar
691.3 Mb
(http)
(custom)
TAR (of BW, NARROWPEAK, TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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