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| Status |
Public on Oct 01, 2010 |
| Title |
The forced loss of Epstein Barr virus from Burkitt's lymphoma cells: uncomplemented cells vs BART miRNA complemented cells. |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Transcriptional profiling of Burkitt lymphoma cells engineered to inducibly express dominant negative EBNA1 (dnEBNA1), which forces the loss of Epstein Barr virus (EBV). Profiles are made of cells in which all of EBV is lost (dnEBNA1 on) or all of EBV except the BART miRNAs is lost (dnEBNA1 on, BART miRNAs ectopically expressed).
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| Overall design |
This is a 2-condition experiment: uncomplemented cells (EBV evicted with dnEBNA1), and BART-complemented cells (EBV evicted with dnEBNA1, BART miRNAs expressed ectopically). There are 3 biological replicates for each condition.
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| |
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| Contributor(s) |
Vereide DT, Sugden B |
| Citation(s) |
23503461 |
| |
| Submission date |
Jun 26, 2010 |
| Last update date |
Feb 22, 2018 |
| Contact name |
Bill Sugden |
| E-mail(s) |
sugden@oncology.wisc.edu
|
| Phone |
608-262-6697
|
| Organization name |
University of Wisconsin-Madison
|
| Department |
Oncology
|
| Street address |
1400 University Avenue
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53706-1599 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL4133 |
Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version) |
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| Samples (6)
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| GSM560521 |
BART-complemented cells, replicate 1 |
| GSM560522 |
BART-complemented cells, replicate 2 |
| GSM560523 |
BART-complemented cells, replicate 3 |
|
| Relations |
| BioProject |
PRJNA128395 |
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