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Series GSE225658 Query DataSets for GSE225658
Status Public on Jun 26, 2023
Title Hnf4 controls gut and liver gene programs in the thymus [CUT&Tag]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We profiled medullary thymic epithelial cells and intestinal epithelial cells by CUT&Tag to investigate mechanisms of T-cell tolerance.
 
Overall design CUT&Tag of mTECs and IECs
 
Contributor(s) Michelson DA, Mathis D, Benoist C
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Submission date Feb 20, 2023
Last update date Jun 29, 2023
Contact name CBDM Lab
E-mail(s) cbdm@hms.harvard.edu
Phone 617-432-7747
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (6)
GSM7053912 Hnf4g.mTEC.rep#1
GSM7053913 Hnf4g.mTEC.rep#2
GSM7053914 Hnf4g.mTEC.rep#3
This SubSeries is part of SuperSeries:
GSE225661 Hnf4 controls gut and liver gene programs in the thymus
Relations
BioProject PRJNA936890

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225658_IEC_Hnf4g.merged.CPM.bigwig 1.4 Mb (ftp)(http) BIGWIG
GSE225658_MEC_Hnf4g_all.merged.CPM.bigwig 22.0 Mb (ftp)(http) BIGWIG
GSE225658_RAW.tar 20.0 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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