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Series GSE225574 Query DataSets for GSE225574
Status Public on Mar 09, 2023
Title B cell receptor signaling in germinal centers prolongs survival and primes B cells for selection [single cell RNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Germinal centers (GCs) are sites of B cell clonal expansion, diversification, and antibody affinity selection. This process is limited and directed by T follicular helper cells that provide helper signals to B cells that endocytose, process, and present cognate antigens in proportion to their B cell receptor (BCR) affinity. Under this model, the BCR functions as an endocytic receptor for antigen capture. How signaling through the BCR contributes to selection is not well understood. To investigate the role of BCR signaling in GC selection, we developed a tracker for antigen binding and presentation and a Bruton’s tyrosine kinase drug-resistant-mutant mouse model. We showed that BCR signaling per se is necessary for the survival and priming of light zone B cells to receive T cell help. Our findings provide insight into how high-affinity antibodies are selected within GCs and are fundamental to our understanding of adaptive immunity and vaccine development.
 
Overall design LZ B1-8 BTKC481S and LZ B18 BTKWT cells were sorted from acalabrutinib or vehicle treated hosts.
 
Contributor(s) Chen ST, Oliveira TY, Gazumyan A, Cipolla M, Nussenzweig MC
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Submission date Feb 18, 2023
Last update date Mar 09, 2023
Contact name Thiago Y Oliveira
E-mail(s) toliveira@rockefeller.edu
Organization name The Rockefeller University
Department Immunology, Virology and Microbiology
Lab Laboratory of Molecular Immunology
Street address 1230 YORK AVE
City NEW YORK
State/province New York
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (16)
GSM7050514 B1-8 BTKC481S A10
GSM7050515 B1-8 BTKC481S A11
GSM7050516 B1-8 BTKC481S A12
This SubSeries is part of SuperSeries:
GSE225575 B cell receptor signaling in germinal centers prolongs survival and primes B cells for selection
Relations
BioProject PRJNA936433

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225574_SRRs_rawfilenames.txt.gz 5.1 Kb (ftp)(http) TXT
GSE225574_barcodes.tsv.gz 1.3 Kb (ftp)(http) TSV
GSE225574_features.tsv.gz 438.6 Kb (ftp)(http) TSV
GSE225574_umiDedup-Exact.mtx.gz 10.4 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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