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Series GSE225270 Query DataSets for GSE225270
Status Public on May 09, 2023
Title Sperm chromatin structure and reproductive fitness are altered by substitution of a single amino acid in mouse Protamine 1 [scRNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Conventional dogma presumes that protamine-mediated DNA compaction in sperm is achieved by electrostatic interactions between DNA and the arginine-rich core of protamines. However, phylogenetic analysis reveals several non-arginine residues conserved within, but not across species. The significance of these residues or post-translational modifications are poorly understood. Here, we investigated the functional role of K49, a rodent-specific lysine residue in mouse protamine 1 (P1) that is acetylated early in spermiogenesis and retained in sperm. In vivo, alanine substitution (P1 K49A) results in loss of programmatic histone retention, decreased sperm motility, decreased male fertility, and in zygotes, premature P1 removal from paternal chromatin, altered DNA replication, and embryonic arrest. In vitro, P1 K49A decreases protamine-DNA binding and alters DNA compaction/decompaction kinetics. Hence, a single amino acid substitution outside the P1 arginine core is sufficient to profoundly alter protein function and developmental outcomes, suggesting that protamine non-arginine residues are essential for reproductive fitness.
 
Overall design Two-cell embryos were collected from mice between 26 and 28 hours post fertilization and each embryo was immediately placed into a single well of a plexWell Rapid Single Cell plate, which was then frozen until sequencing.
Web link https://www.nature.com/articles/s41594-023-01033-4
 
Contributor(s) Hammoud SS, Li JZ
Citation(s) 37460896
Submission date Feb 14, 2023
Last update date Aug 08, 2023
Contact name Qianyi Ma
E-mail(s) qzm100@gmail.com
Organization name University of Michigan
Department Human Genetics
Street address 1141 E Catherine St
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (48)
GSM7043024 WT-1_2-cell
GSM7043025 WT-7_2-cell
GSM7043026 WT-13_2-cell
This SubSeries is part of SuperSeries:
GSE225271 Sperm chromatin structure and reproductive fitness are altered by substitution of a single amino acid in mouse Protamine 1
Relations
BioProject PRJNA934867

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225270_RAW.tar 5.0 Mb (http)(custom) TAR (of TXT)
GSE225270_c48_g32403.txt.gz 884.2 Kb (ftp)(http) TXT
GSE225270_gene_FPKM.annot48.txt.gz 2.5 Mb (ftp)(http) TXT
GSE225270_gene_TPM.annot48.txt.gz 2.5 Mb (ftp)(http) TXT
GSE225270_gene_expected_count.annot48.txt.gz 2.0 Mb (ftp)(http) TXT
GSE225270_info48.txt.gz 421 b (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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