|
| Status |
Public on Oct 15, 2010 |
| Title |
Abf1 and Rap1 effect on nucleosome occupancy in yeast |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
We grew wild type and corresponding mutant abf1 and rap1 temperature sensitive yeast at 25 C, then for one hour after shifting to 37 C. We then prepared nucleosomal (mostly mononucleosomal) DNA and hybridized to tiling arrays.
|
| |
|
| Overall design |
Three abf1 ts mutant and corresponding wild type, and three rap1 ts mutant and corresponding wild type (note not the same wild type; BY4741 for Rap1, but TMY86 for Abf1)
|
| |
|
| Contributor(s) |
Morse RH, Tsui K, Nislow C |
| Citation(s) |
21081559 |
| |
| Submission date |
Jun 22, 2010 |
| Last update date |
Mar 22, 2012 |
| Contact name |
Randall Heywood Morse |
| E-mail(s) |
randall.morse@wadsworth.org
|
| Phone |
518 486-3116
|
| Fax |
518 474-3181
|
| URL |
http://www.wadsworth.org/resnres/bios/morse.htm
|
| Organization name |
Wadsworth Center
|
| Lab |
Developmental Genetics
|
| Street address |
|
| City |
Albany |
| State/province |
NY |
| ZIP/Postal code |
12201-2002 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL7070 |
Scerevisiae_tlg Array |
| GPL7249 |
[Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array |
|
| Samples (5)
|
|
| Relations |
| BioProject |
PRJNA128473 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE22514_Abf1_ts2-4_vs_3_Nislow_control_signal.bar.gz |
18.7 Mb |
(ftp)(http) |
BAR |
| GSE22514_Abf1_ts2-4_vs_3_Nislow_control_signal.bar.txt.gz |
19.1 Mb |
(ftp)(http) |
TXT |
| GSE22514_Abf1_wt2-4_vs_3_Nislow_control_pvalue.bar.gz |
16.8 Mb |
(ftp)(http) |
BAR |
| GSE22514_Abf1_wt2-4_vs_3_Nislow_control_pvalue.bar.txt.gz |
18.8 Mb |
(ftp)(http) |
TXT |
| GSE22514_Abf1_wt2-4_vs_3_Nislow_control_signal.bar.gz |
18.6 Mb |
(ftp)(http) |
BAR |
| GSE22514_Abf1_wt2-4_vs_3_Nislow_control_signal.bar.txt.gz |
19.1 Mb |
(ftp)(http) |
TXT |
| GSE22514_RAW.tar |
404.1 Mb |
(http)(custom) |
TAR (of CEL) |
| GSE22514_Three_rap1_ts_vs_3_control_Jan08_pvalue.bar.gz |
16.3 Mb |
(ftp)(http) |
BAR |
| GSE22514_Three_rap1_ts_vs_3_control_Jan08_pvalue.bar.txt.gz |
17.5 Mb |
(ftp)(http) |
TXT |
| GSE22514_Three_rap1_ts_vs_3_control_Jan08_signal.bar.gz |
18.7 Mb |
(ftp)(http) |
BAR |
| GSE22514_Three_rap1_ts_vs_3_control_Jan08_signal.bar.txt.gz |
19.1 Mb |
(ftp)(http) |
TXT |
| GSE22514_Three_rap1_ts_vs_3_wt_2-sided_pvalue.bar.gz |
15.7 Mb |
(ftp)(http) |
BAR |
| GSE22514_Three_rap1_ts_vs_3_wt_2-sided_pvalue.bar.txt.gz |
17.7 Mb |
(ftp)(http) |
TXT |
| GSE22514_Three_rap1_ts_vs_3_wt_2-sided_signal.bar.gz |
17.8 Mb |
(ftp)(http) |
BAR |
| GSE22514_Three_rap1_ts_vs_3_wt_2-sided_signal.bar.txt.gz |
18.2 Mb |
(ftp)(http) |
TXT |
| GSE22514_Three_rap1_wt_vs_3_control_Jan08_pvalue.bar.gz |
16.1 Mb |
(ftp)(http) |
BAR |
| GSE22514_Three_rap1_wt_vs_3_control_Jan08_pvalue.bar.txt.gz |
17.5 Mb |
(ftp)(http) |
TXT |
| GSE22514_Three_rap1_wt_vs_3_control_Jan08_signal.bar.gz |
18.7 Mb |
(ftp)(http) |
BAR |
| GSE22514_Three_rap1_wt_vs_3_control_Jan08_signal.bar.txt.gz |
19.2 Mb |
(ftp)(http) |
TXT |
| GSE22514_abf1TS-WT_pvalue.bar.gz |
16.4 Mb |
(ftp)(http) |
BAR |
| GSE22514_abf1TS-WT_pvalue.bar.txt.gz |
17.9 Mb |
(ftp)(http) |
TXT |
| GSE22514_abf1TS-WT_signal.bar.gz |
17.9 Mb |
(ftp)(http) |
BAR |
| GSE22514_abf1TS-WT_signal.bar.txt.gz |
18.4 Mb |
(ftp)(http) |
TXT |
| Processed data are available on Series record |
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