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Series GSE224667 Query DataSets for GSE224667
Status Public on Sep 29, 2023
Title Genome-wide maps of chromatin accessibility changes in bone marrow derived macrophages (BMDMs) isolated from Baf60a KO or WT mice
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Bone marrow cells from Baf60a KO or WT mice were differentiated into BMDMs and treated with or without oxLDL for 48h.

 
Overall design Quantification of chromatin accessibility and transcription factor footprints in Baf60a KO and WT BMDMs using ATACseq.
 
Contributor(s) Zhao Y, Zhang J, Chen E
Citation(s) 37768825
Submission date Feb 06, 2023
Last update date Dec 29, 2023
Contact name Yang Zhao
E-mail(s) ypharan@umich.edu
Organization name University of Michigan
Street address 2800 Plymouth Rd
City Ann Arbor
ZIP/Postal code 48105
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM7029328 ATAC-Seq WT
GSM7029329 ATAC-Seq KO
GSM7029330 ATAC-Seq oxLDL_WT
This SubSeries is part of SuperSeries:
GSE224668 Myeloid BAF60a Deficiency Alters Metabolic Homeostasis and Exacerbates Atherosclerosis
Relations
BioProject PRJNA934488

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE224667_RAW.tar 11.5 Mb (http)(custom) TAR (of BED, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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