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Series GSE223410 Query DataSets for GSE223410
Status Public on May 30, 2024
Title CUT&Tag analysis of R-loops in Ube2t knockdown P19 cells (optimized)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary DNA sequencing of libraries from CUT&Tag with R-loops antibody (S9.6) in Ube2t knockdown and control P19 cells
Overall design To understand the role of UBE2T in resolving R-loops. Mouse P19 cells were used. Two kinds of Ube2t knockdown adenovirus were used. No antibody group was regarded as control sample.
Contributor(s) Yu Y, Zhao S, Yang Y, Xu W
Citation(s) 36928776
Submission date Jan 20, 2023
Last update date May 31, 2024
Contact name Yongze Yu
Phone 15668316939
Organization name Shandong University
Street address 文化西路44号国家辅助生殖与优生工程技术研究中心
City Jinan
State/province Shandong
ZIP/Postal code 250000
Country China
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM6947347 P19, shCtrl, No antibody (optimized)
GSM6947348 P19, shCtrl, S9.6 (optimized)
GSM6947349 P19, shUbe2t #1, S9.6 (optimized)
BioProject PRJNA925943

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE223410_RAW.tar 321.3 Mb (http)(custom) TAR (of BW, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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