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GEO accession:
Series GSE223058
Query DataSets for GSE223058
Status
Public on Jul 15, 2024
Title
TFIIIC and MYCN link the three-dimensional chromatin structure of promoters to transcription termination of stalled RNA polymerase
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
39177021
Submission date
Jan 17, 2023
Last update date
Sep 27, 2024
Contact name
Martin Eilers
Organization name
University of Wuerzburg
Department
Chair for Biochemistry and Molecular Biology
Lab
Martin Eilers
Street address
Am Hubland
City
Wuerzburg
ZIP/Postal code
97074
Country
Germany
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (62)
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GSM6938940
CnR-EXOSC5-EtOH-EtOH
GSM6938941
CnR-EXOSC5-EtOH-OHT
GSM6938942
CnR-EXOSC5-DOX-EtOH
GSM6938943
CnR-EXOSC5-DOX-OHT
GSM6938944
CnR-EXOSC5-Merged-IgG
GSM6938945
ChIPseq-H3K4me1
GSM6938946
ChIPseq-H3K27ac
GSM6938947
ChIPseq-H3K4me3
GSM6938948
ChIPseq-Histones-Merged-Input
GSM6938949
ChIPseq-RNAPII-A10-S-OHT
GSM6938950
ChIPseq-RNAPII-S-Merged-Input
GSM6938951
ChIPRx-RNAPII-A10-EtOH-OHT
GSM6938952
ChIPRx-RNAPII-pS2-DOX-EtOH
GSM6938953
ChIPRx-RNAPII-pS2-DOX-OHT
GSM6938954
ChIPRx-RNAPII-pS2-EtOH-EtOH
GSM6938955
ChIPRx-RNAPII-pS2-EtOH-OHT
GSM6938956
ChIPRx-RNAPII-Merged-Input
GSM6938957
ChIPRx-TF3C5-EtOH-DMSO
GSM6938958
ChIPRx-TF3C5-OHT-DMSO
GSM6938959
ChIPRx-TF3C5-EtOH-DRB
GSM6938960
ChIPRx-TF3C5-OHT-DRB
GSM6938961
ChIPRx-TF3C5-Merged-Input
GSM6938962
ChIPRx-RNAPII-unp-DOX-EtOH-N1
GSM6938963
ChIPRx-RNAPII-unp-DOX-OHT-N1
GSM6938964
ChIPRx-RNAPII-unp-EtOH-EtOH-N1
GSM6938965
ChIPRx-RNAPII-unp-EtOH-OHT-N1
GSM6938966
ChIPRx-RNAPII-unp-Merged-Input-N1
GSM6938967
ChIPRx-RNAPII-unp-DOX-EtOH-N2
GSM6938968
ChIPRx-RNAPII-unp-DOX-OHT-N2
GSM6938969
ChIPRx-RNAPII-unp-EtOH-EtOH-N2
GSM6938970
ChIPRx-RNAPII-unp-EtOH-OHT-N2
GSM6938971
ChIPRx-RNAPII-unp-Merged-Input-N2
GSM6938983
pLHiC-G1
GSM6938984
pLHiC-G1-OHT
GSM6938985
pLHiChIP-MYCN-OHT
GSM6938986
pLHiC-MYCN-Input-OHT
GSM6938987
spLHiChIP-MYCN-Sphase-OHT-DMSO
GSM6938988
spLHiChIP-MYCN-Sphase-OHT-MLN
GSM6938989
spLHiChIP-MYCN-EtOH-OHT-N1
GSM6938990
spLHiChIP-MYCN-DOX-OHT-N1
GSM6938991
spLHiChIP-MYCN-EtOH-OHT-N2
GSM6938992
spLHiChIP-MYCN-DOX-OHT-N2
GSM6938993
spLHiChIP-TF3C5-EtOH-DMSO
GSM6938994
spLHiChIP-TF3C5-OHT-DMSO
GSM6938995
spLHiChIP-TF3C5-EtOH-DRB
GSM6938996
spLHiChIP-TF3C5-OHT-DRB
GSM6938997
spLHiChIP-RAD21-EtOH-DMSO
GSM6938998
spLHiChIP-RAD21-OHT-DMSO
GSM6938999
spLHiChIP-RAD21-EtOH-DRB
GSM6939000
spLHiChIP-RAD21-OHT-DRB
GSM6939010
RNAseq-EtOH-EtOH-N1
GSM6939011
RNAseq-EtOH-OHT-N1
GSM6939012
RNAseq-DOX-EtOH-N1
GSM6939013
RNAseq-DOX-OHT-N1
GSM6939014
RNAseq-EtOH-EtOH-N2
GSM6939015
RNAseq-EtOH-OHT-N2
GSM6939016
RNAseq-DOX-EtOH-N2
GSM6939017
RNAseq-DOX-OHT-N2
GSM6939018
RNAseq-EtOH-EtOH-N3
GSM6939019
RNAseq-EtOH-OHT-N3
GSM6939020
RNAseq-DOX-EtOH-N3
GSM6939021
RNAseq-DOX-OHT-N3
This SuperSeries is composed of the following SubSeries:
GSE223052
TFIIIC and MYCN link the three-dimensional chromatin structure of promoters to transcription termination of stalled RNA polymerase (ChIPseq CnR)
GSE223054
TFIIIC and MYCN link the three-dimensional chromatin structure of promoters to transcription termination of stalled RNA polymerase (HiC HiChIP)
GSE223057
TFIIIC and MYCN link the three-dimensional chromatin structure of promoters to transcription termination of stalled RNA polymerase (RNA-Seq)
Relations
BioProject
PRJNA924767
Download family
Format
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Supplementary file
Size
Download
File type/resource
GSE223058_RAW.tar
5.2 Gb
(http)
(custom)
TAR (of BEDGRAPH, BEDPE, HIC)
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