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| Status |
Public on Jun 03, 2024 |
| Title |
Investigating the factors that regulate dengue virus infection in Aedes aegypti female mosquitoes with Aedes aegypti transcriptomic analysis |
| Organism |
Aedes aegypti |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Understanding the molecular determinants of the mosquitoes’ competence to host the viruses holds promise to prevent their transmission.
We performed transcriptomic analysis with data obtained from RNA-seq of dengue- or naïve- infected mosquitoes on day 1, 2, and 7 post infections
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| Overall design |
Based on the gene expression profile of RNA-seq analysis, we compared different days of the gene expression ratio between dengue and naïve infection. The different groups of transcripts were clustered and were analyzed with KEGG pathway analysis.
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| Contributor(s) |
Huang Y, Lee K, Shiao S, Chen C, Yu G, Yu M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jan 13, 2023 |
| Last update date |
Jun 03, 2024 |
| Contact name |
Yu-Ning Huang |
| E-mail(s) |
wendy.h.8514@gmail.com
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| Organization name |
National Taiwan University
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| Department |
Biochemistry and molecular biology
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| Street address |
No.1 Jen Ai road section 1
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| City |
Taipei |
| ZIP/Postal code |
100 |
| Country |
Taiwan |
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| Platforms (1) |
| GPL28657 |
Illumina NovaSeq 6000 (Aedes aegypti) |
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| Samples (18)
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| GSM6934668 |
Aedes aegypti, Dengue-infected, Day1, Rep1 |
| GSM6934669 |
Aedes aegypti, Dengue-infected, Day1, Rep2 |
| GSM6934670 |
Aedes aegypti, Dengue-infected, Day1, Rep3 |
| GSM6934671 |
Aedes aegypti, Dengue-infected, Day2, Rep1 |
| GSM6934672 |
Aedes aegypti, Dengue-infected, Day2, Rep2 |
| GSM6934673 |
Aedes aegypti, Dengue-infected, Day2, Rep3 |
| GSM6934674 |
Aedes aegypti, Dengue-infected, Day7, Rep1 |
| GSM6934675 |
Aedes aegypti, Dengue-infected, Day7, Rep2 |
| GSM6934676 |
Aedes aegypti, Dengue-infected, Day7, Rep3 |
| GSM6934677 |
Aedes aegypti, Naïve-infected, Day1, Rep1 |
| GSM6934678 |
Aedes aegypti, Naïve-infected, Day1, Rep2 |
| GSM6934679 |
Aedes aegypti, Naïve-infected, Day1, Rep3 |
| GSM6934680 |
Aedes aegypti, Naïve-infected, Day2, Rep1 |
| GSM6934681 |
Aedes aegypti, Naïve-infected, Day2, Rep2 |
| GSM6934682 |
Aedes aegypti, Naïve-infected, Day2, Rep3 |
| GSM6934683 |
Aedes aegypti, Naïve-infected, Day7, Rep1 |
| GSM6934684 |
Aedes aegypti, Naïve-infected, Day7, Rep2 |
| GSM6934685 |
Aedes aegypti, Naïve-infected, Day7, Rep3 |
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| Relations |
| BioProject |
PRJNA923715 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE222893_Day1_DENV_vs_Naive_D1_vs_N1_.xlsx |
4.3 Mb |
(ftp)(http) |
XLSX |
| GSE222893_Day2_DENV_vs_Naive_D2_vs_N2_.xlsx |
4.0 Mb |
(ftp)(http) |
XLSX |
| GSE222893_Day7_DENV_vs_Naive_D7_vs_N7_.xlsx |
4.0 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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