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Series GSE221118 Query DataSets for GSE221118
Status Public on Dec 16, 2022
Title IFN gamma signaling in cytotoxic T cells restricts antitumor responses by inhibiting the maintenance and clonality of intra-tumoral stem-like T cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary IFN gamma signaling in cytotoxic T cells restricts antitumor responses by inhibiting the maintenance and clonality of intra-tumoral stem-like T cells
 
Overall design C57Bl6 WT mice and CD8-IFNgRKO mice were engrafted with the melanoma cell line B16 expressing OVA. CD3+ CD8+ T cells were isolated by Fluorescence-activated cell sorting (FACS) from the tumor and draining lymph node after 12 days and subjected to scRNA and scTCR sequencing.
 
Contributor(s) Gérard A, Lau V, Koneva LA, Sansom SN
Citation(s) 36658158
Submission date Dec 16, 2022
Last update date Feb 06, 2023
Contact name Audrey Gerard
E-mail(s) audrey.gerard@kennedy.ox.ac.uk
Phone 01865612665
Organization name The Kennedy Institute of Rheumatology
Street address Roosevelt Dr.
City Oxford
ZIP/Postal code OX3 7FY
Country United Kingdom
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM6845587 cd8_tumor_wt_s07, scrna_seq
GSM6845588 cd8_ln_wt_s05, scrna_seq
GSM6845589 cd8_tumor_ko_s08, scrna_seq
Relations
BioProject PRJNA913000

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE221118_RAW.tar 257.9 Mb (http)(custom) TAR (of CSV, MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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