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Series GSE220799 Query DataSets for GSE220799
Status Public on Jul 12, 2024
Title Spatial gene expression profile of the brain from WT and Sema6d-/- mice
Organism Mus musculus
Experiment type Other
Summary Sema6D is highly expressed in the brain. We used spatial transcriptional analysis to reveal the roles of Sema6D in the brain.
 
Overall design The brains of WT and Sema6d-/- mice were dissected and analyzed by Visium spatial transcriptomics.
 
Contributor(s) Nakanishi Y, Izumi M, Kang S, Kumanogoh A
Citation(s) 39002542
Submission date Dec 13, 2022
Last update date Oct 11, 2024
Contact name Daisuke Motooka
E-mail(s) dry_team@ngs.gen-info.osaka-u.ac.jp
Organization name NGS core facility, Research Institute for Microbial Diseases, Osaka University
Street address 3-1, Yamadaoka
City Suita
State/province Osaka
ZIP/Postal code 5650871
Country Japan
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM6820295 WT1
GSM6820296 WT2
GSM6820297 KO1
Relations
BioProject PRJNA911569

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE220799_F4816_seq_template.xlsx 127.7 Kb (ftp)(http) XLSX
GSE220799_RAW.tar 448.5 Mb (http)(custom) TAR (of CSV, H5, JPG, MTX, PNG, TSV, ZIP)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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