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| Status |
Public on Nov 08, 2023 |
| Title |
Deciphering the regulatory network of the NAC transcription factor FvRIF, a master regulator in controlling strawberry fruit ripening [DAP-seq] |
| Organism |
Fragaria vesca |
| Experiment type |
Other
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| Summary |
To better understand FvRIF-mediated transcriptional regulation of fruit ripening, we performed DNA affinity purification sequencing (DAP-seq) to unravel FvRIF binding sites at the genome level. For DAP-seq analysis, the recombinant FvRIF fusion protein was used to purify the sheared genomic DNA of strawberry fruits. Two independent biological replicates of DAP-seq and DNA ‘input’ negative control libraries were prepared and submitted for deep sequencing.
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| Overall design |
Genomic DNA enrichment profiles in strawberry fruits of 22 DPA wild-type were generated by DAP-seq, in two independent biological replicates of DAP-seq and input, using Illumina Nova S4.
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| Contributor(s) |
Qin G, Li X |
| Citation(s) |
37506031 |
| |
| Submission date |
Dec 12, 2022 |
| Last update date |
Nov 09, 2023 |
| Contact name |
Xiaojing Li |
| E-mail(s) |
lixiaojing@ibcas.ac.cn
|
| Phone |
18613319694
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| Organization name |
Chinese Academy of Sciences
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| Department |
Institute of Botany
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| Lab |
Key Laboratory of Plant Resources
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| Street address |
No.20 Nanxincun, Xiangshan, Beijing
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| City |
Beijing |
| State/province |
Beijing |
| ZIP/Postal code |
100093 |
| Country |
China |
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| Platforms (1) |
| GPL32944 |
Illumina NovaSeq 6000 (Fragaria vesca) |
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| Samples (3) |
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| This SubSeries is part of SuperSeries: |
| GSE220786 |
Deciphering the regulatory network of the NAC transcription factor FvRIF, a master regulator in controlling strawberry fruit ripening |
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| Relations |
| BioProject |
PRJNA911319 |
