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Status |
Public on Apr 01, 2024 |
Title |
Regulation of IkB kinase family crosstalk by an N4BP1-caspase-8 axis |
Organism |
Mus musculus |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
38697117 |
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Submission date |
Nov 29, 2022 |
Last update date |
Aug 13, 2024 |
Contact name |
Rohit Reja |
E-mail(s) |
rejar@gene.com
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Phone |
+1-650-467-7615
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Organization name |
Genentech
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Street address |
1 DNA Way
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City |
South San Francisco |
State/province |
CA |
ZIP/Postal code |
94080 |
Country |
USA |
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Platforms (3) |
GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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Samples (111)
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GSM6760734 |
KO-unstim-rep2 [RNA Pol II ChIP-seq] |
GSM6760735 |
WT-R837-2h-rep1 [RNA Pol II ChIP-seq] |
GSM6760736 |
WT-R837-2h-rep2 [RNA Pol II ChIP-seq] |
GSM6760737 |
KO-R837-2h-rep1 [RNA Pol II ChIP-seq] |
GSM6760738 |
KO-R837-2h-rep2 [RNA Pol II ChIP-seq] |
GSM6760739 |
WT-R837-4h-rep1 [RNA Pol II ChIP-seq] |
GSM6760740 |
WT-R837-4h-rep2 [RNA Pol II ChIP-seq] |
GSM6760741 |
KO-R837-4h-rep1 [RNA Pol II ChIP-seq] |
GSM6760742 |
KO-R837-4h-rep2 [RNA Pol II ChIP-seq] |
GSM6760743 |
WT-R837-6h-rep1 [RNA Pol II ChIP-seq] |
GSM6760744 |
WT-R837-6h-rep2 [RNA Pol II ChIP-seq] |
GSM6760745 |
KO-R837-6h-rep1 [RNA Pol II ChIP-seq] |
GSM6760746 |
KO-R837-6h-rep2 [RNA Pol II ChIP-seq] |
GSM6760747 |
Input |
GSM6760748 |
WT BMDMs, untreated, rep 1 |
GSM6760749 |
WT BMDMs, untreated, rep 2 |
GSM6760750 |
WT BMDMs, untreated, rep 3 |
GSM6760751 |
KO BMDMs, untreated, rep 1 |
GSM6760752 |
KO BMDMs, untreated, rep 2 |
GSM6760753 |
KO BMDMs, untreated, rep 3 |
GSM6760754 |
WT BMDMs, Pam3 2h, rep 1 |
GSM6760755 |
WT BMDMs, Pam3 2h, rep 2 |
GSM6760756 |
WT BMDMs, Pam3 2h, rep 3 |
GSM6760757 |
KO BMDMs, Pam3 2h, rep 1 |
GSM6760758 |
KO BMDMs, Pam3 2h, rep 2 |
GSM6760759 |
KO BMDMs, Pam3 2h, rep 3 |
GSM6760760 |
WT BMDMs, Pam3 4h, rep 1 |
GSM6760761 |
WT BMDMs, Pam3 4h, rep 2 |
GSM6760762 |
WT BMDMs, Pam3 4h, rep 3 |
GSM6760763 |
KO BMDMs, Pam3 4h, rep 1 |
GSM6760764 |
KO BMDMs, Pam3 4h, rep 2 |
GSM6760765 |
KO BMDMs, Pam3 4h, rep 3 |
GSM6760766 |
WT BMDMs, Pam3 6h, rep 1 |
GSM6760767 |
WT BMDMs, Pam3 6h, rep 2 |
GSM6760768 |
WT BMDMs, Pam3 6h, rep 3 |
GSM6760769 |
KO BMDMs, Pam3 6h, rep 1 |
GSM6760770 |
KO BMDMs, Pam3 6h, rep 2 |
GSM6760771 |
KO BMDMs, Pam3 6h, rep 3 |
GSM6760772 |
WT BMDMs, Pam3 8h, rep 1 |
GSM6760773 |
WT BMDMs, Pam3 8h, rep 2 |
GSM6760774 |
WT BMDMs, Pam3 8h, rep 3 |
GSM6760775 |
KO BMDMs, Pam3 8h, rep 1 |
GSM6760776 |
KO BMDMs, Pam3 8h, rep 2 |
GSM6760777 |
KO BMDMs, Pam3 8h, rep 3 |
GSM6760778 |
WT BMDMs, R837 2h, rep 1 |
GSM6760779 |
WT BMDMs, R837 2h, rep 2 |
GSM6760780 |
WT BMDMs, R837 2h, rep 3 |
GSM6760781 |
KO BMDMs, R837 2h, rep 1 |
GSM6760782 |
KO BMDMs, R837 2h, rep 2 |
GSM6760783 |
KO BMDMs, R837 2h, rep 3 |
GSM6760784 |
WT BMDMs, R837 4h, rep 1 |
GSM6760785 |
WT BMDMs, R837 4h, rep 2 |
GSM6760786 |
WT BMDMs, R837 4h, rep 3 |
GSM6760787 |
KO BMDMs, R837 4h, rep 1 |
GSM6760788 |
KO BMDMs, R837 4h, rep 2 |
GSM6760789 |
KO BMDMs, R837 4h, rep 3 |
GSM6760790 |
WT BMDMs, R837 6h, rep 1 |
GSM6760791 |
WT BMDMs, R837 6h, rep 2 |
GSM6760792 |
WT BMDMs, R837 6h, rep 3 |
GSM6760793 |
KO BMDMs, R837 6h, rep 1 |
GSM6760794 |
KO BMDMs, R837 6h, rep 2 |
GSM6760795 |
KO BMDMs, R837 6h, rep 3 |
GSM6760796 |
WT BMDMs, R837 8h, rep 1 |
GSM6760797 |
WT BMDMs, R837 8h, rep 2 |
GSM6760798 |
WT BMDMs, R837 8h, rep 3 |
GSM6760799 |
KO BMDMs, R837 8h, rep 1 |
GSM6760800 |
KO BMDMs, R837 8h, rep 2 |
GSM6760801 |
KO BMDMs, R837 8h, rep 3 |
GSM6760802 |
KO +R837 7h [SAM24402129] |
GSM6760803 |
KO +R837 7h [SAM24402128] |
GSM6760804 |
KO +R837 7h [SAM24402127] |
GSM6760805 |
WT +R837 7h [SAM24402126] |
GSM6760806 |
WT +R837 7h [SAM24402125] |
GSM6760807 |
WT +R837 7h [SAM24402124] |
GSM6760808 |
KO +R837 3h +ActD 4h [SAM24402123] |
GSM6760809 |
KO +R837 3h +ActD 4h [SAM24402122] |
GSM6760810 |
KO +R837 3h +ActD 4h [SAM24402121] |
GSM6760811 |
WT +R837 3h +ActD 4h [SAM24402120] |
GSM6760812 |
WT +R837 3h +ActD 4h [SAM24402119] |
GSM6760813 |
WT +R837 3h +ActD 4h [SAM24402118] |
GSM6760814 |
KO +R837 3h +ActD 2h [SAM24402117] |
GSM6760815 |
KO +R837 3h +ActD 2h [SAM24402116] |
GSM6760816 |
KO +R837 3h +ActD 2h [SAM24402115] |
GSM6760817 |
WT +R837 3h +ActD 2h [SAM24402114] |
GSM6760818 |
WT +R837 3h +ActD 2h [SAM24402113] |
GSM6760819 |
WT +R837 3h +ActD 2h [SAM24402112] |
GSM6760820 |
KO +R837 3h +ActD 1h [SAM24402111] |
GSM6760821 |
KO +R837 3h +ActD 1h [SAM24402110] |
GSM6760822 |
KO +R837 3h +ActD 1h [SAM24402109] |
GSM6760823 |
WT +R837 3h +ActD 1h [SAM24402108] |
GSM6760824 |
WT +R837 3h +ActD 1h [SAM24402107] |
GSM6760825 |
WT +R837 3h +ActD 1h [SAM24402106] |
GSM6760826 |
KO +R837 3h +ActD 0.5h [SAM24402105] |
GSM6760827 |
KO +R837 3h +ActD 0.5h [SAM24402104] |
GSM6760828 |
KO +R837 3h +ActD 0.5h [SAM24402103] |
GSM6760829 |
WT +R837 3h +ActD 0.5h [SAM24402102] |
GSM6760830 |
WT +R837 3h +ActD 0.5h [SAM24402101] |
GSM6760831 |
WT +R837 3h +ActD 0.5h [SAM24402100] |
GSM6760832 |
KO +R837 3h [SAM24402099] |
GSM6760833 |
KO +R837 3h [SAM24402098] |
GSM6760834 |
KO +R837 3h [SAM24402097] |
GSM6760835 |
WT +R837 3h [SAM24402096] |
GSM6760836 |
WT +R837 3h [SAM24402095] |
GSM6760837 |
WT +R837 3h [SAM24402094] |
GSM6760838 |
50% WT GFP+ BMDMs and 50% WT BMDMs unstimulated |
GSM6760839 |
50% WT GFP+ BMDMs and 50% N4bp1 KO BMDMs unstimulated |
GSM6760840 |
50% WT GFP+ BMDMs and 50% WT BMDMs + TLR7 stimulation |
GSM6760841 |
50% WT GFP+ BMDMs and 50% N4bp1 KO BMDMs + TLR7 stimulation |
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This SuperSeries is composed of the following SubSeries:
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GSE218954 |
Regulation of IkB kinase family crosstalk by an N4BP1-caspase-8 axis [ChIP-seq] |
GSE218955 |
Regulation of IkB kinase family crosstalk by an N4BP1-caspase-8 axis [RNA-seq NGS3611] |
GSE218956 |
Regulation of IkB kinase family crosstalk by an N4BP1-caspase-8 axis [RNA-seq NGS3799] |
GSE218957 |
Regulation of IkB kinase family crosstalk by an N4BP1-caspase-8 axis [scRNA-seq] |
GSE219005 |
Regulation of IkB kinase family crosstalk by an N4BP1-caspase-8 axis [NGS4102 RNA-seq] |
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Relations |
BioProject |
PRJNA906444 |
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