GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE218878 Query DataSets for GSE218878
Status Public on Nov 10, 2023
Title Chromatin profile of Anthoceros agrestis
Organism Anthoceros agrestis
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Bryophytes comprise mosses, liverworts and hornworts. The chromatin landscapes of mosses and liverworts are different, leaving open the question regarding the identity of the chromatin landscape of all bryophytes. To address this question we profiled five chromatin marks using a model hornworts, Anthoceros agrestis.
Overall design Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for histone marks H3K9me1, H3K27me1, H3K4me3, H3K36me3 and H3K27me3 as well as H3.
Contributor(s) Hisanaga T, Berger F
Citation(s) 37823324
Submission date Nov 28, 2022
Last update date Apr 02, 2024
Contact name Tetsuya Hisanaga
Phone +43 1 79044-9814
Organization name Gregor Mendel Institute
Lab Berger lab
Street address Dr.Bohr-gasse 3
City Vienna
State/province Vienna
ZIP/Postal code 1030
Country Austria
Platforms (1)
GPL32890 Illumina HiSeq 4000 (Anthoceros agrestis)
Samples (18)
GSM6758109 set1, AagrOXF 4week thalli, input, rep1
GSM6758110 set1, AagrOXF 4week thalli, H3, rep1
GSM6758111 set1, AagrOXF 4week thalli, H3K9me1, rep1
This SubSeries is part of SuperSeries:
GSE218880 5-methyl cytosine profile and chromatin profile of Anthoceros agrestis
BioProject PRJNA906075

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource 1.9 Mb (ftp)(http) GFF3
GSE218878_Anthoceros_agrestis_Oxford_gene_annotations.gff.gz 7.0 Mb (ftp)(http) GFF
GSE218878_Anthoceros_agrestis_Oxford_genome.fasta.gz 33.9 Mb (ftp)(http) FASTA 64.2 Mb (ftp)(http) BW
GSE218878_H3K27me1_peaks.broadPeak.gz 396.5 Kb (ftp)(http) BROADPEAK 58.4 Mb (ftp)(http) BW
GSE218878_H3K27me3_peaks.broadPeak.gz 319.4 Kb (ftp)(http) BROADPEAK 62.0 Mb (ftp)(http) BW
GSE218878_H3K36me3_peaks.broadPeak.gz 772.8 Kb (ftp)(http) BROADPEAK 67.8 Mb (ftp)(http) BW
GSE218878_H3K4me3_peaks.broadPeak.gz 493.0 Kb (ftp)(http) BROADPEAK 60.3 Mb (ftp)(http) BW
GSE218878_H3K9me1_peaks.broadPeak.gz 500.5 Kb (ftp)(http) BROADPEAK
GSE218878_RAW.tar 1.1 Gb (http)(custom) TAR (of BROADPEAK, BW)
GSE218878_update.xlsx 101.3 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap