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Status |
Public on Nov 10, 2023 |
Title |
Chromatin profile of Anthoceros agrestis |
Organism |
Anthoceros agrestis |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
Bryophytes comprise mosses, liverworts and hornworts. The chromatin landscapes of mosses and liverworts are different, leaving open the question regarding the identity of the chromatin landscape of all bryophytes. To address this question we profiled five chromatin marks using a model hornworts, Anthoceros agrestis.
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Overall design |
Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for histone marks H3K9me1, H3K27me1, H3K4me3, H3K36me3 and H3K27me3 as well as H3.
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Contributor(s) |
Hisanaga T, Berger F |
Citation(s) |
37823324 |
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Submission date |
Nov 28, 2022 |
Last update date |
Apr 02, 2024 |
Contact name |
Tetsuya Hisanaga |
E-mail(s) |
tetsuya.hisanaga@gmi.oeaw.ac.at
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Phone |
+43 1 79044-9814
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Organization name |
Gregor Mendel Institute
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Lab |
Berger lab
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Street address |
Dr.Bohr-gasse 3
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City |
Vienna |
State/province |
Vienna |
ZIP/Postal code |
1030 |
Country |
Austria |
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Platforms (1) |
GPL32890 |
Illumina HiSeq 4000 (Anthoceros agrestis) |
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Samples (18)
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GSM6758109 |
set1, AagrOXF 4week thalli, input, rep1 |
GSM6758110 |
set1, AagrOXF 4week thalli, H3, rep1 |
GSM6758111 |
set1, AagrOXF 4week thalli, H3K9me1, rep1 |
GSM6758112 |
set1, AagrOXF 4week thalli, H3K36me3, rep1 |
GSM6758113 |
set1, AagrOXF 4week thalli, input, rep2 |
GSM6758114 |
set1, AagrOXF 4week thalli, H3, rep2 |
GSM6758115 |
set1, AagrOXF 4week thalli, H3K9me1, rep2 |
GSM6758116 |
set1, AagrOXF 4week thalli, H3K36me3, rep2 |
GSM6758117 |
set2, AagrOXF 4week thalli, input, rep1 |
GSM6758118 |
set2, AagrOXF 4week thalli, H3, rep1 |
GSM6758119 |
set2, AagrOXF 4week thalli, H3K4me3, rep1 |
GSM6758120 |
set2, AagrOXF 4week thalli, H3K27me1, rep1 |
GSM6758121 |
set2, AagrOXF 4week thalli, H3K27me3, rep1 |
GSM6758122 |
set2, AagrOXF 4week thalli, input, rep2 |
GSM6758123 |
set2, AagrOXF 4week thalli, H3, rep2 |
GSM6758124 |
set2, AagrOXF 4week thalli, H3K4me3, rep2 |
GSM6758125 |
set2, AagrOXF 4week thalli, H3K27me1, rep2 |
GSM6758126 |
set2, AagrOXF 4week thalli, H3K27me3, rep2 |
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This SubSeries is part of SuperSeries: |
GSE218880 |
5-methyl cytosine profile and chromatin profile of Anthoceros agrestis |
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Relations |
BioProject |
PRJNA906075 |
Supplementary file |
Size |
Download |
File type/resource |
GSE218878_Aa.us.fa.mod.EDTA.TEanno.gff3.gz |
1.9 Mb |
(ftp)(http) |
GFF3 |
GSE218878_Anthoceros_agrestis_Oxford_gene_annotations.gff.gz |
7.0 Mb |
(ftp)(http) |
GFF |
GSE218878_Anthoceros_agrestis_Oxford_genome.fasta.gz |
33.9 Mb |
(ftp)(http) |
FASTA |
GSE218878_H3K27me1.log2r_H3_uniq_merged.bw |
64.2 Mb |
(ftp)(http) |
BW |
GSE218878_H3K27me1_peaks.broadPeak.gz |
396.5 Kb |
(ftp)(http) |
BROADPEAK |
GSE218878_H3K27me3.log2r_H3_uniq_merged.bw |
58.4 Mb |
(ftp)(http) |
BW |
GSE218878_H3K27me3_peaks.broadPeak.gz |
319.4 Kb |
(ftp)(http) |
BROADPEAK |
GSE218878_H3K36me3.log2r_H3_uniq_merged.bw |
62.0 Mb |
(ftp)(http) |
BW |
GSE218878_H3K36me3_peaks.broadPeak.gz |
772.8 Kb |
(ftp)(http) |
BROADPEAK |
GSE218878_H3K4me3.log2r_H3_uniq_merged.bw |
67.8 Mb |
(ftp)(http) |
BW |
GSE218878_H3K4me3_peaks.broadPeak.gz |
493.0 Kb |
(ftp)(http) |
BROADPEAK |
GSE218878_H3K9me1.log2r_H3_uniq_merged.bw |
60.3 Mb |
(ftp)(http) |
BW |
GSE218878_H3K9me1_peaks.broadPeak.gz |
500.5 Kb |
(ftp)(http) |
BROADPEAK |
GSE218878_RAW.tar |
1.1 Gb |
(http)(custom) |
TAR (of BROADPEAK, BW) |
GSE218878_update.xlsx |
101.3 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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