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Series GSE217829 Query DataSets for GSE217829
Status Public on Nov 10, 2023
Title Epigenetic regulator landscape of HOX/MEIS expression in AML
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
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Submission date Nov 11, 2022
Last update date Nov 10, 2023
Contact name Karina Ofelia Barbosa Guerra
E-mail(s) karinabarbosa4@gmail.com, adeshpande@sbpdiscovery.org
Organization name Sanford Burnham Prebys Medical Discovery Institute
Department Tumor Initiation & Maintenance Program
Lab Deshpande
Street address 10901 North Torrey Pines Rd, Deshpande Lab RM6210B
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (47)
GSM6726602 U937 cells, MLL knockout, rep 1
GSM6726603 U937 cells, MLL knockout, rep 2
GSM6726604 U937 cells, MLL knockout, rep 3
This SuperSeries is composed of the following SubSeries:
GSE217776 Effect of CRISPR knockout of MLL, CSNK2A1 and SGF29 on gene expression profiles in acute myeloid leukemia U937 cells [RNA-seq]
GSE217777 Mapping of genome-wide histone modifications in SGF29 knockout vs NTC U937 AML cells. Mapping of binding of SGF29 and Tudor-domain mutant SGF29_D196R by FLAG ChIP [ChIP-seq SGF29]
GSE217778 CRISPR Phenotypic enrichment screen for epigenetic regulators of MEIS1 expression in acute myeloid leukemia (AML) [CRISPRScreens]
Relations
BioProject PRJNA900618

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE217829_RAW.tar 2.7 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp

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