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GEO accession:
Series GSE216800
Query DataSets for GSE216800
Status
Public on Nov 15, 2023
Title
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://www.nature.com/articles/s41586-023-06733-x
Citation(s)
37968405
Submission date
Oct 28, 2022
Last update date
Nov 17, 2023
Contact name
Hongbo Chi
E-mail(s)
hongbo.chi@stjude.org
Organization name
St Jude Children's Research Hospital
Department
Immunology
Street address
262 Danny Thomas Place
City
Memphis
State/province
TN
ZIP/Postal code
38105
Country
USA
Platforms (2)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL23038
[Clariom_S_Mouse] Affymetrix Clariom S Assay, Mouse (Includes Pico Assay)
Samples (89)
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GSM6690444
sgRbpj_1_day 7
GSM6690445
sgRbpj_2_day 7
GSM6690446
sgRbpj_3_day 7
GSM6690447
sgRbpj_4_day 7
GSM6690448
sgRbpj+ sgIrf1_1_day 7
GSM6690449
sgRbpj+ sgIrf1_2_day 7
GSM6690450
sgRbpj+ sgIrf1_3_day 7
GSM6690451
sgIrf1_1_day7
GSM6690452
sgNTC_1_day7
GSM6690453
sgIrf1_2_day7
GSM6690454
sgNTC_2_day7
GSM6690455
sgIrf1_3_day7
GSM6690456
sgNTC_3_day7
GSM6690457
sgIrf1_4_day7
GSM6690458
sgNTC_4_day7
GSM6693116
spike for sgIkzf1_1_ day 7
GSM6693117
sgIkzf1_1_day 7
GSM6693118
spike for sgIkzf1_2_ day 7
GSM6693119
sgIkzf1_2_day 7
GSM6693120
ATAC-seq_spike for sgRbpj_Tpex_1_ day 7
GSM6693121
ATAC-seq_spike for sgRbpj_Tex_1_ day 7
GSM6693122
ATAC-seq_sgRbpj_Tpex_1_day 7
GSM6693123
ATAC-seq_sgRbpj_Tex_1_day 7
GSM6693124
ATAC-seq_spike for sgRbpj_Tpex_2_ day 7
GSM6693125
ATAC-seq_spike for sgRbpj_Tex_2_ day 7
GSM6693126
ATAC-seq_sgRbpj_Tpex_2_day 7
GSM6693127
ATAC-seq_sgRbpj_Tex_2_day 7
GSM6693128
ATAC-seq_spike for sgRbpj_Tpex_3_ day 7
GSM6693129
ATAC-seq_spike for sgRbpj_Tex_3_ day 7
GSM6693130
ATAC-seq_sgRbpj_Tpex_3_day 7
GSM6693131
ATAC-seq_sgRbpj_Tex_3_day 7
GSM6693132
scRNA-seq_spike for sgRbpj_1_ day 7
GSM6693133
scRNA-seq_sgRbpj_1_day 7
GSM6697660
sgRNA Library-transduced OT-I cells B1S1
GSM6697661
sgRNA Library-transduced OT-I cells B1S2
GSM6697662
sgRNA Library-transduced OT-I cells B1S3
GSM6697663
sgRNA Library-transduced OT-I cells B1S4
GSM6697664
sgRNA Library-transduced OT-I cells B2S1
GSM6697665
sgRNA Library-transduced OT-I cells B2S2
GSM6697666
sgRNA Library-transduced OT-I cells B2S3
GSM6697667
sgRNA Library-transduced OT-I cells B2S4
GSM6697668
sgRNA Library-transduced OT-I cells B2S5
GSM6697669
sgRNA Library-transduced OT-I cells B2S6
GSM6697670
sgRNA Library-transduced OT-I cells B2S7
GSM6697671
sgRNA Library-transduced OT-I cells B2S8
GSM6697672
sgRNA Library-transduced OT-I cells B2S9
GSM6697673
sgRNA Library-transduced OT-I cells B2S10
GSM6697674
sgRNA Library-transduced OT-I cells B2S11
GSM6697675
sgRNA Library-transduced OT-I cells B2S12
GSM6743921
"spike for sgEts1_1"_ day 7 1
GSM6743922
"spike for sgEts1_1"_ day 7 2
GSM6743923
sgEts1_1_day 7 1
GSM6743924
sgEts1_1_day 7 2
GSM7673566
sgEts1_Tpex_1
GSM7673567
sgEts1_Tex_1
GSM7673568
spike for sgEts1_Tpex_1
GSM7673569
spike for sgEts1_Tex_1
GSM7673570
sgEts1_Tpex_2
GSM7673571
sgEts1_Tex_2
GSM7673572
spike for sgEts1_Tpex_2
GSM7673573
spike for sgEts1_Tex_2
GSM7673574
sgEts1_Tpex_3
GSM7673575
sgEts1_Tex_3
GSM7673576
spike for sgEts1_Tpex_3
GSM7673577
spike for sgEts1_Tex_3
GSM7673578
sgEts1_Tpex_4
GSM7673579
sgEts1_Tex_4
GSM7673580
spike for sgEts1_Tpex_4
GSM7673581
spike for sgEts1_Tex_4
GSM7673582
spike for sgIkzf1_Tpex_1
GSM7673583
spike for sgIkzf1_Tex_1
GSM7673584
sgIkzf1_Tpex_1
GSM7673585
sgIkzf1_Tex_1
GSM7673586
spike for sgIkzf1_Tpex_2
GSM7673587
spike for sgIkzf1_Tex_2
GSM7673588
sgIkzf1_Tpex_2
GSM7673589
sgIkzf1_Tex_2
GSM7673590
spike for sgIkzf1_Tpex_3
GSM7673591
spike for sgIkzf1_Tex_3
GSM7673592
sgIkzf1_Tpex_3
GSM7673593
sgIkzf1_Tex_3
GSM7673594
spike for sgIkzf1_Tpex_4
GSM7673595
spike for sgIkzf1_Tex_4
GSM7673596
sgIkzf1_Tpex_4
GSM7673597
sgIkzf1_Tex_4
GSM7673598
spike for sgIkzf1_Tpex_5
GSM7673599
spike for sgIkzf1_Tex_5
GSM7673600
sgIkzf1_Tpex_5
GSM7673601
sgIkzf1_Tex_5
This SuperSeries is composed of the following SubSeries:
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GSE216749
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [microarray]
GSE216796
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ikzf1_scRNAseq]
GSE216797
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Rbpj_ATAC-seq]
GSE216798
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Rbpj_scRNAseq]
GSE216909
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [scCRISPR]
GSE218372
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ets1 scRNAseq]
GSE239801
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ets1 ATAC-Seq]
GSE239802
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ikzf1 ATAC-Seq]
Relations
BioProject
PRJNA895421
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE216800_RAW.tar
2.0 Gb
(http)
(custom)
TAR (of CEL, CSV, TAR)
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