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Series GSE216589 Query DataSets for GSE216589
Status Public on Oct 15, 2023
Title Comparing the microbiota composition between HPV positive and negative patients with CRC
Organisms Homo sapiens; unidentified
Experiment type Other
Summary Total DNA was extracted from the stool of the patients, amplified to collect amplicons of variable V3–V4 regions (primers 341F and 805R) of the bacterial 16s rRNA gene and sequenced with MiSeq (2x300bp) Illumina platform.
 
Overall design Total DNA was extracted from the stool of the patients, amplified to collect amplicons of variable V3–V4 regions (primers 341F and 805R) of the bacterial 16s rRNA gene and sequenced with MiSeq (2x300bp) Illumina platform.
Web link https://github.com/LeandroD94/Papers/tree/main/2022_HPV_promotes_CRC_batteriota
 
Contributor(s) Ramazzotti M, Amedei A, Niccolai E, Di Gloria L
Citation(s) 37612430
Submission date Oct 26, 2022
Last update date Oct 16, 2023
Contact name Matteo Ramazzotti
E-mail(s) matteo.ramazzotti@unifi.it
Organization name University of Florence
Department Experimental and Clinical Biomedical Sciences
Street address viale Morgagni 50
City Firenze
ZIP/Postal code 50134
Country Italy
 
Platforms (2)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL32781 Illumina MiSeq (unidentified)
Samples (22)
GSM6680963 Microbiota of Stool from patient HPV+1
GSM6680964 Microbiota of Stool from patient HPV+2
GSM6680965 Microbiota of Stool from patient HPV+3
Relations
BioProject PRJNA894473

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216589_feature_table.tsv.gz 335.9 Kb (ftp)(http) TSV
GSE216589_rep_sequences.fasta.gz 1.1 Mb (ftp)(http) FASTA
GSE216589_taxonomy.tsv.gz 526.3 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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