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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 31, 2023 |
| Title |
TONSL is an immortalizing oncogene of the chromosome 8q24.3 amplicon and new therapeutic target in breast cancer |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37057595 |
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| Submission date |
Oct 20, 2022 |
| Last update date |
Jan 30, 2024 |
| Contact name |
Harikrishna Nakshatri |
| Organization name |
Indiana University School of Medicine
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| Department |
General Surgery
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| Street address |
980 W. Walnut St. R3C218C
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| City |
Indianapolis |
| State/province |
IN |
| ZIP/Postal code |
46202 |
| Country |
USA |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (24)
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| GSM6663302 |
Primary breast epithelial cells, rep1 (ATAC-seq) |
| GSM6663303 |
TONSL overexpressing Primary breast epithelial cells, rep1 (ATAC-seq) |
| GSM6663304 |
Primary breast epithelial cells, rep2 (ATAC-seq) |
| GSM6663305 |
TONSL overexpressing Primary breast epithelial cells, rep2 (ATAC-seq) |
| GSM6663306 |
Primary breast epithelial cells, rep3 (ATAC-seq) |
| GSM6663307 |
TONSL overexpressing Primary breast epithelial cells, rep3 (ATAC-seq) |
| GSM6664069 |
Primary breast epithelial cells, rep1 (RNA-seq) |
| GSM6664071 |
TONSL overexpressing Primary breast epithelial cells, rep1 (RNA-seq) |
| GSM6664072 |
Primary breast epithelial cells, rep2 (RNA-seq) |
| GSM6664073 |
TONSL overexpressing Primary breast epithelial cells, rep2 (RNA-seq) |
| GSM6664074 |
Primary breast epithelial cells, rep3 (RNA-seq) |
| GSM6664075 |
TONSL overexpressing Primary breast epithelial cells, rep3 (RNA-seq) |
| GSM6664461 |
TMD436, PLKO, rep1 (RNA-seq) |
| GSM6664462 |
TMD436, PLKO, rep2 (RNA-seq) |
| GSM6664463 |
TMD436, PLKO, rep3 (RNA-seq) |
| GSM6664464 |
TMD436, shTONSL Clone1, rep1 (RNA-seq) |
| GSM6664466 |
TMD436, shTONSL Clone1, rep2 (RNA-seq) |
| GSM6664467 |
TMD436, shTONSL Clone1, rep3 (RNA-seq) |
| GSM6664468 |
TMD436, shTONSL Clone2, rep1 (RNA-seq) |
| GSM6664469 |
TMD436, shTONSL Clone2, rep2 (RNA-seq) |
| GSM6664470 |
TMD436, shTONSL Clone2, rep3 (RNA-seq) |
| GSM6664472 |
TMD436, shTONSL Clone3, rep1 (RNA-seq) |
| GSM6664473 |
TMD436, shTONSL Clone3, rep2 (RNA-seq) |
| GSM6664474 |
TMD436, shTONSL Clone3, rep3 (RNA-seq) |
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| This SuperSeries is composed of the following SubSeries: |
| GSE216237 |
Study of differential chromatin accessibility within primary breast epithelial cells from healthy donor and its TONSL overexpressing counterpart |
| GSE216238 |
Primary breast epithelial cells from healthy donor versus its TONSL overexpressing counterpart-enriched gene expression |
| GSE216239 |
Tumor derived MDA-MB-436 pLKO versus MDA-MB-436 shTONSL cells-enriched gene expression |
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| Relations |
| BioProject |
PRJNA892635 |
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