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Series GSE215992 Query DataSets for GSE215992
Status Public on May 15, 2023
Title Control of alveolar macrophage differentiation by Siah1a/2 ubiquitin ligases limits carcinogen-induced lung adenocarcinoma [scRNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Tumor microenvironment components, including T and myeloid cells, play important roles in lung adenocarcinoma (LADC) progression and response to therapy. Here, we identify a role for Siah1a/2 ubiquitin ligases in controlling alveolar macrophage (AM) differentiation and urethane-induced LADC. Genetic ablation of Siah1a/2 in AMs enriched their immature state, coinciding with increased pro-tumorigenic and inflammatory gene signatures and abundance of Siah1a/2 substrates NRF2 and B-catenin. Urethane administration to mice enriched the population of monocytic and immature-like AMs, which were more prevalent in the lungs of mice carrying Siah1a/2-ablated macrophages. While resembling transitional profibrotic macrophages often seen in lung fibrosis, enrichment of immature AMs coincided with the development of more frequent and larger lung tumors in urethane-treated mice harboring Siah1a/2 ablated macrophages compared with controls. Gene expression signature of Siah1a/2 ablated immature-like AMs is associated with increased infiltration of CD14+ immune cells and worse survival of LADC patients. Our findings identify Siah1a/2 as gatekeepers of cancer development by controlling AM differentiation and profibrotic phenotypes contributing to carcinogen-induced lung cancer.
 
Overall design Cd45+ cells from WT and Siah1a/2 mutant mouse lungs were sorted using flow cytometry and gene expression analyzed using 10X Genomic scRNA-seq protocol.
 
Contributor(s) Scortegagna M, Ronai ZA
Citation(s) 37078793
Submission date Oct 18, 2022
Last update date Aug 14, 2023
Contact name Ze'ev A. Ronai
E-mail(s) ronai@sbpdiscovery.org
Organization name Sanford Burnham Prebys Medical Discovery Institute
Department Tumor Initiation and Maintenance Program, NCI-Designated Cancer Center
Street address 10901 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (2)
GSM6652502 WT lung Cd45+ scRNA-seq
GSM6652503 Siah1a/2 KO lung Cd45+ scRNA-seq
This SubSeries is part of SuperSeries:
GSE215993 Control of alveolar macrophage differentiation by Siah1a/2 ubiquitin ligases limits carcinogen-induced lung adenocarcinoma
Relations
BioProject PRJNA891679

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Supplementary file Size Download File type/resource
GSE215992_barcodes.tsv.gz 75.6 Kb (ftp)(http) TSV
GSE215992_features.tsv.gz 524.0 Kb (ftp)(http) TSV
GSE215992_matrix.mtx.gz 147.2 Mb (ftp)(http) MTX
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Raw data are available in SRA
Processed data are available on Series record

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