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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 11, 2023 |
| Title |
WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Oct 04, 2022 |
| Last update date |
May 13, 2023 |
| Contact name |
Russell Jones |
| E-mail(s) |
russell.jones@vai.org
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| Phone |
6166001610
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| Organization name |
Van Andel Institute
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| Street address |
333 Bostwick Ave. NE
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| City |
Grand Rapids |
| State/province |
MI |
| ZIP/Postal code |
49503 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (60)
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| GSM6616322 |
MEF, WT, IL-1β, H3K27ac |
| GSM6616323 |
MEF, KO, ctrl, Input |
| GSM6616324 |
MEF, KO, ctrl, H3K27ac |
| GSM6616325 |
MEF, KO, IL-1β, Input |
| GSM6616326 |
MEF, KO, IL-1β, H3K27ac |
| GSM6616327 |
MEF, DKO, ctrl, Input |
| GSM6616328 |
MEF, DKO, ctrl, H3K27ac |
| GSM6616329 |
MEF, DKO, IL-1β, Input |
| GSM6616330 |
MEF, DKO, IL-1β, H3K27ac |
| GSM6616331 |
MEF, WT, ctrl, rep1 |
| GSM6616332 |
MEF, WT, IL1β, rep1 |
| GSM6616333 |
MEF, KO, ctrl, rep1 |
| GSM6616334 |
MEF, KO, IL1β, rep1 |
| GSM6616335 |
MEF, DKO_A1, ctrl, rep1 |
| GSM6616336 |
MEF, DKO_A1, IL1β, rep1 |
| GSM6616337 |
MEF, DKO_A2, ctrl, rep1 |
| GSM6616338 |
MEF, DKO_A2, IL1β, rep1 |
| GSM6616339 |
MEF, WT, ctrl, rep2 |
| GSM6616340 |
MEF, WT, IL1β, rep2 |
| GSM6616341 |
MEF, KO, ctrl, rep2 |
| GSM6616342 |
MEF, KO, IL1β, rep2 |
| GSM6616343 |
MEF, DKO_A1, ctrl, rep2 |
| GSM6616344 |
MEF, DKO_A1, IL1β, rep2 |
| GSM6616345 |
MEF, DKO_A2, ctrl, rep2 |
| GSM6616346 |
MEF, DKO_A2, IL1β, rep2 |
| GSM6616347 |
MEF, WT, ctrl, rep3 |
| GSM6616348 |
MEF, WT, IL1β, rep3 |
| GSM6616349 |
MEF, KO, ctrl, rep3 |
| GSM6616350 |
MEF, KO, IL1β, rep3 |
| GSM6616351 |
MEF, DKO_A1, ctrl, rep3 |
| GSM6616352 |
MEF, DKO_A1, IL1β, rep3 |
| GSM6616353 |
MEF, DKO_A2, ctrl, rep3 |
| GSM6616354 |
MEF, DKO_A2, IL1β, rep3 |
| GSM7100709 |
MEF, WT, ctrl, rep1 |
| GSM7100710 |
MEF, WT, ctrl, rep2 |
| GSM7100711 |
MEF, WT, ctrl, rep3 |
| GSM7100712 |
MEF, WT, A485, rep1 |
| GSM7100713 |
MEF, WT, A485, rep2 |
| GSM7100714 |
MEF, WT, A485, rep3 |
| GSM7100715 |
MEF, KO, ctrl, rep1 |
| GSM7100716 |
MEF, KO, ctrl, rep2 |
| GSM7100717 |
MEF, KO, ctrl, rep3 |
| GSM7100718 |
MEF, KO, A485, rep1 |
| GSM7100719 |
MEF, KO, A485, rep2 |
| GSM7100720 |
MEF, KO, A485, rep3 |
| GSM7100721 |
MEF, WT, IL1β, rep1 |
| GSM7100722 |
MEF, WT, IL1β, rep2 |
| GSM7100723 |
MEF, WT, IL1β, rep3 |
| GSM7100724 |
MEF, WT, A485+IL1β, rep1 |
| GSM7100725 |
MEF, WT, A485+IL1β, rep2 |
| GSM7100726 |
MEF, WT, A485+IL1β, rep3 |
| GSM7100727 |
MEF, KO, IL1β, rep1 |
| GSM7100728 |
MEF, KO, IL1β, rep2 |
| GSM7100729 |
MEF, KO, IL1β, rep3 |
| GSM7100730 |
MEF, KO, A485+IL1β, rep1 |
| GSM7100731 |
MEF, KO, A485+IL1β, rep2 |
| GSM7100732 |
MEF, KO, A485+IL1β, rep3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE214822 |
Genome wide screen of H3K27ac enrichment in WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts |
| GSE214823 |
RNA-seq profiling of WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts |
| GSE227446 |
RNA-seq profiling of WT and LKB1 knockout mouse embryonic fibroblasts treated with the HAT inhibitor A485 |
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| Relations |
| BioProject |
PRJNA887178 |
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