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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 11, 2023 |
| Title |
RNA-seq profiling of WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Investigating transcriptional profile of WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts untreated or stimulated with IL-1β
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| Overall design |
RNA-seq was performed on WT, LKB1 KO, and LKB1/CRTC2 KO MEFs either untreated or stimulated with IL-1β for 6 hours
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| Contributor(s) |
Compton SE, Jones RG |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Oct 04, 2022 |
| Last update date |
May 13, 2023 |
| Contact name |
Russell Jones |
| E-mail(s) |
russell.jones@vai.org
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| Phone |
6166001610
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| Organization name |
Van Andel Institute
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| Street address |
333 Bostwick Ave. NE
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| City |
Grand Rapids |
| State/province |
MI |
| ZIP/Postal code |
49503 |
| Country |
USA |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (24)
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| GSM6616334 |
MEF, KO, IL1β, rep1 |
| GSM6616335 |
MEF, DKO_A1, ctrl, rep1 |
| GSM6616336 |
MEF, DKO_A1, IL1β, rep1 |
| GSM6616337 |
MEF, DKO_A2, ctrl, rep1 |
| GSM6616338 |
MEF, DKO_A2, IL1β, rep1 |
| GSM6616339 |
MEF, WT, ctrl, rep2 |
| GSM6616340 |
MEF, WT, IL1β, rep2 |
| GSM6616341 |
MEF, KO, ctrl, rep2 |
| GSM6616342 |
MEF, KO, IL1β, rep2 |
| GSM6616343 |
MEF, DKO_A1, ctrl, rep2 |
| GSM6616344 |
MEF, DKO_A1, IL1β, rep2 |
| GSM6616345 |
MEF, DKO_A2, ctrl, rep2 |
| GSM6616346 |
MEF, DKO_A2, IL1β, rep2 |
| GSM6616347 |
MEF, WT, ctrl, rep3 |
| GSM6616348 |
MEF, WT, IL1β, rep3 |
| GSM6616349 |
MEF, KO, ctrl, rep3 |
| GSM6616350 |
MEF, KO, IL1β, rep3 |
| GSM6616351 |
MEF, DKO_A1, ctrl, rep3 |
| GSM6616352 |
MEF, DKO_A1, IL1β, rep3 |
| GSM6616353 |
MEF, DKO_A2, ctrl, rep3 |
| GSM6616354 |
MEF, DKO_A2, IL1β, rep3 |
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| This SubSeries is part of SuperSeries: |
| GSE214824 |
WT, LKB1 KO, and LKB1/CRTC2 KO mouse embryonic fibroblasts |
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| Relations |
| BioProject |
PRJNA887179 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE214823_RAW.tar |
8.0 Mb |
(http)(custom) |
TAR (of TAB) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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