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GEO accession:
Series GSE213225
Query DataSets for GSE213225
Status
Public on Jun 22, 2023
Title
Factors controlling somatic reprogramming of transformed tumorigeneic cells to induced pluripotent-like stem cells
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37452056
Submission date
Sep 12, 2022
Last update date
Sep 12, 2023
Contact name
Andrew P Hutchins
E-mail(s)
andrewh@sustech.edu.cn
Organization name
Southern University of Science and Technology
Department
Bioinformatics
Lab
Bioinformatics and Genomics
Street address
1088 Xueyuan Rd
City
Shenzhen
ZIP/Postal code
518055
Country
China
Platforms (1)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (198)
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GSM6573952
MEF Ras.E1A +PD (ATAC-seq) rep1
GSM6573953
MEF Ras.E1A +PD (ATAC-seq) rep2
GSM6573954
MEF Ras.E1A +TSA (ATAC-seq) rep1
GSM6573955
MEF Ras.E1A (ATAC-seq) rep1
GSM6573956
MEF Ras.E1A (ATAC-seq) rep2
GSM6573957
MEF Hdac7SA.Mef2d (ATAC-seq) rep1
GSM6573958
MEF Hdac7SA.Mef2d (ATAC-seq) rep2
GSM6573959
MEF Ras.Myc +PD (ATAC-seq) rep1
GSM6573960
MEF Ras.Myc +PD (ATAC-seq) rep2
GSM6573961
MEF Ras.Myc +TSA (ATAC-seq) rep1
GSM6573962
MEF Ras.Myc (ATAC-seq) rep1
GSM6573963
MEF Ras.Myc (ATAC-seq) rep2
GSM6575874
MEF (ICR) WT Passage 1 Rep1
GSM6575875
MEF (ICR) WT Passage 2 Rep1
GSM6575876
MEF (ICR) WT Passage 2 Rep2
GSM6575877
MEF (ICR) WT Passage 3 Rep1
GSM6575878
MEF (ICR) WT Passage 3 Rep2
GSM6575879
MEF (ICR) WT Passage 4 Rep1
GSM6575880
MEF (ICR) WT Passage 4 Rep2
GSM6575881
MEF (ICR) WT Passage 5 Rep1
GSM6575882
MEF (ICR) WT Passage 5 Rep2
GSM6575883
MEF (ICR) WT Passage 6 Rep1
GSM6575884
MEF (ICR) WT Passage 6 Rep2
GSM6575885
MEF (Oct4-GFP knockin) WT Passage 1
GSM6575886
iPSC-like Bcl2-Myc GFP+ line #1
GSM6575887
iPSC-like Bcl2-Myc GFP+ line #2
GSM6575888
iPSC-like Bcl2-Myc GFP+ line #3
GSM6575889
iPSC-like Hdac7SA-Mef2d GFP+ line #1
GSM6575890
iPSC-like Hdac7SA-Mef2d GFP+ line #2
GSM6575891
iPSC-like Hdac7SA-Mef2d GFP+ line #3
GSM6575892
iPSC-like p53DD-htert GFP+ line #1
GSM6575893
OSKM MEF (ICR) Bcl2-E1A D0 Rep1
GSM6575894
OSKM MEF (ICR) Bcl2-Myc D0 Rep1
GSM6575895
OSKM MEF (ICR) Bcl2-Myc D0 Rep2
GSM6575896
OSKM MEF (ICR) Bcl2-Myc D0
GSM6575897
OSKM MEF (ICR) E1A-Hras D0 Rep1
GSM6575898
OSKM MEF (ICR) E1A-Hras D0 Rep2
GSM6575899
OSKM MEF (ICR) E1A-Hras D0
GSM6575900
OSKM MEF (ICR) Hdac7SA-E1A D0 Rep1
GSM6575901
OSKM MEF (ICR) Hdac7SA-Mef2d D0 Rep1
GSM6575902
OSKM MEF (ICR) Hdac7SA-Mef2d D0 Rep2
GSM6575903
OSKM MEF (ICR) Hdac7SA-Mef2d D0
GSM6575904
OSKM MEF (ICR) Hdac7SA-Myc D0 Rep1
GSM6575905
OSKM MEF (ICR) Hras-Myc D0 Rep1
GSM6575906
OSKM MEF (ICR) Hras-Myc D0 Rep2
GSM6575907
OSKM MEF (ICR) p53DD-E1A D0 Rep1
GSM6575908
OSKM MEF (ICR) p53DD-Myc D0 Rep1
GSM6575909
OSKM MEF (ICR) SV40T D0 Rep1
GSM6575910
OSKM MEF (ICR) SV40T D0 Rep2
GSM6575911
OSKM MEF (ICR) SV40T D0 Rep3
GSM6575912
OSKM MEF (OG2) Bcl2-E1A D0 Rep1
GSM6575913
OSKM MEF (OG2) Bcl2-E1A D0 Rep2
GSM6575914
OSKM MEF (OG2) Bcl2-E1A D12 Rep1
GSM6575915
OSKM MEF (OG2) Bcl2-E1A D12 Rep2
GSM6575916
OSKM MEF (OG2) Bcl2-E1A D15 Rep1
GSM6575917
OSKM MEF (OG2) Bcl2-E1A D15 Rep2
GSM6575918
OSKM MEF (OG2) Bcl2-E1A D3 Rep1
GSM6575919
OSKM MEF (OG2) Bcl2-E1A D3 Rep2
GSM6575920
OSKM MEF (OG2) Bcl2-E1A D6 Rep1
GSM6575921
OSKM MEF (OG2) Bcl2-E1A D6 Rep2
GSM6575922
OSKM MEF (OG2) Bcl2-E1A D9 Rep1
GSM6575923
OSKM MEF (OG2) Bcl2-E1A D9 Rep2
GSM6575924
iPSC-like Bcl2-E1A vc GFP+ line #1
GSM6575925
OSKM MEF (OG2) Bcl2-Myc D0 Rep1
GSM6575926
OSKM MEF (OG2) Bcl2-Myc D0 Rep2
GSM6575927
OSKM MEF (OG2) Bcl2-Myc D12 Rep1
GSM6575928
OSKM MEF (OG2) Bcl2-Myc D12 Rep2
GSM6575929
OSKM MEF (OG2) Bcl2-Myc D15 Rep1
GSM6575930
OSKM MEF (OG2) Bcl2-Myc D15 Rep2
GSM6575931
OSKM MEF (OG2) Bcl2-Myc D3 Rep1
GSM6575932
OSKM MEF (OG2) Bcl2-Myc D6 Rep1
GSM6575933
OSKM MEF (OG2) Bcl2-Myc D6 Rep2
GSM6575934
OSKM MEF (OG2) Bcl2-Myc D9 Rep1
GSM6575935
OSKM MEF (OG2) Bcl2-Myc D9 Rep2
GSM6575936
OSKM MEF (OG2) E1A-Hras D0 Rep1
GSM6575937
OSKM MEF (OG2) E1A-Hras D0 Rep2
GSM6575938
OSKM MEF (OG2) E1A-Hras D0 Rep3
GSM6575939
OSKM MEF (OG2) E1A-Hras D12 Rep1
GSM6575940
OSKM MEF (OG2) E1A-Hras D12 Rep2
GSM6575941
OSKM MEF (OG2) E1A-Hras D15 Rep1
GSM6575942
OSKM MEF (OG2) E1A-Hras D15 Rep2
GSM6575943
OSKM MEF (OG2) E1A-Hras D3 Rep1
GSM6575944
OSKM MEF (OG2) E1A-Hras D3 Rep2
GSM6575945
OSKM MEF (OG2) E1A-Hras D6 Rep1
GSM6575946
OSKM MEF (OG2) E1A-Hras D6 Rep2
GSM6575947
OSKM MEF (OG2) E1A-Hras D9 Rep1
GSM6575948
OSKM MEF (OG2) E1A-Hras D9 Rep2
GSM6575949
iPSC-like E1A-ras chir-pd-y-bix GFP+ line #1
GSM6575950
iPSC-like E1A-ras vc-chir-pd-y-bix GFP+ line #1
GSM6575951
iPSC-like E1A-ras vc-chir-pd-y-bix GFP+ line #2
GSM6575952
iPSC-like E1A-ras vc-chir-pd-y GFP+ line #1
GSM6575953
iPSC-like E1A-ras vc-chir-y-bix GFP+ line #1
GSM6575954
iPSC-like E1A-ras vc-pd-y-bix GFP+ line #1
GSM6575955
iPSC-like Hdac7SA-Mef2d chir-pd-y-bix GFP+ line #1
GSM6575956
iPSC-like Hdac7SA-Mef2d vc-chir-bix GFP+ line #1
GSM6575957
iPSC-like Hdac7SA-Mef2d vc-chir-pd-bix GFP+ line #1
GSM6575958
iPSC-like Hdac7SA-Mef2d vc-chir-pd-y-bix GFP+ line #1
GSM6575959
iPSC-like Hdac7SA-Mef2d vc-chir-pd-y-bix GFP+ line #2
GSM6575960
iPSC-like Hdac7SA-Mef2d vc-chir-pd-y GFP+ line #1
GSM6575961
iPSC-like Hdac7SA-Mef2d vc-chir-y-bix GFP+ line #1
GSM6575962
iPSC-like Hdac7SA-Mef2d vc-pd-y-bix GFP+ line #1
GSM6575963
iPSC-like Hdac7SA-Mef2d vc GFP+ line #4
GSM6575964
iPSC-like Hdac7SA-Mef2d vc GFP+ line #5
GSM6575965
iPSC-like Hdac7SA-Myc vc GFP+ line #1
GSM6575966
OSKM MEF (OG2) Hdac7SA-E1A D0 Rep1
GSM6575967
OSKM MEF (OG2) Hdac7SA-E1A D12 Rep1
GSM6575968
OSKM MEF (OG2) Hdac7SA-E1A D12 Rep2
GSM6575969
OSKM MEF (OG2) Hdac7SA-E1A D15 Rep1
GSM6575970
OSKM MEF (OG2) Hdac7SA-E1A D15 Rep2
GSM6575971
OSKM MEF (OG2) Hdac7SA-E1A D3 Rep1
GSM6575972
OSKM MEF (OG2) Hdac7SA-E1A D3 Rep2
GSM6575973
OSKM MEF (OG2) Hdac7SA-E1A D6 Rep1
GSM6575974
OSKM MEF (OG2) Hdac7SA-E1A D6 Rep2
GSM6575975
OSKM MEF (OG2) Hdac7SA-E1A D9 Rep1
GSM6575976
OSKM MEF (OG2) Hdac7SA-E1A D9 Rep2
GSM6575977
OSKM MEF (OG2) Hdac7SA-Mef2d D0 Rep1
GSM6575978
OSKM MEF (OG2) Hdac7SA-Mef2d D0 Rep2
GSM6575979
OSKM MEF (OG2) Hdac7SA-Mef2d D0 Rep3
GSM6575980
OSKM MEF (OG2) Hdac7SA-Mef2d D12 Rep1
GSM6575981
OSKM MEF (OG2) Hdac7SA-Mef2d D12 Rep2
GSM6575982
OSKM MEF (OG2) Hdac7SA-Mef2d D15 Rep1
GSM6575983
OSKM MEF (OG2) Hdac7SA-Mef2d D15 Rep2
GSM6575984
OSKM MEF (OG2) Hdac7SA-Mef2d D3 Rep1
GSM6575985
OSKM MEF (OG2) Hdac7SA-Mef2d D6 Rep1
GSM6575986
OSKM MEF (OG2) Hdac7SA-Mef2d D6 Rep2
GSM6575987
OSKM MEF (OG2) Hdac7SA-Mef2d D9 Rep1
GSM6575988
OSKM MEF (OG2) Hdac7SA-Mef2d D9 Rep2
GSM6575989
OSKM MEF (OG2) Hdac7SA-Myc D0 Rep1
GSM6575990
OSKM MEF (OG2) Hdac7SA-Myc D0 Rep2
GSM6575991
OSKM MEF (OG2) Hdac7SA-Myc D12 Rep1
GSM6575992
OSKM MEF (OG2) Hdac7SA-Myc D12 Rep2
GSM6575993
OSKM MEF (OG2) Hdac7SA-Myc D15 Rep1
GSM6575994
OSKM MEF (OG2) Hdac7SA-Myc D15 Rep2
GSM6575995
OSKM MEF (OG2) Hdac7SA-Myc D3 Rep1
GSM6575996
OSKM MEF (OG2) Hdac7SA-Myc D3 Rep2
GSM6575997
OSKM MEF (OG2) Hdac7SA-Myc D6 Rep1
GSM6575998
OSKM MEF (OG2) Hdac7SA-Myc D6 Rep2
GSM6575999
OSKM MEF (OG2) Hdac7SA-Myc D9 Rep1
GSM6576000
OSKM MEF (OG2) Hdac7SA-Myc D9 Rep2
GSM6576001
OSKM MEF (OG2) Hras-Myc D0 Rep1
GSM6576002
OSKM MEF (OG2) Hras-Myc D0 Rep2
GSM6576003
OSKM MEF (OG2) Hras-Myc D0 Rep3
GSM6576004
OSKM MEF (OG2) Hras-Myc D12 Rep1
GSM6576005
OSKM MEF (OG2) Hras-Myc D12 Rep2
GSM6576006
OSKM MEF (OG2) Hras-Myc D15 Rep1
GSM6576007
OSKM MEF (OG2) Hras-Myc D15 Rep2
GSM6576008
OSKM MEF (OG2) Hras-Myc D3 Rep1
GSM6576009
OSKM MEF (OG2) Hras-Myc D6 Rep1
GSM6576010
OSKM MEF (OG2) Hras-Myc D6 Rep2
GSM6576011
OSKM MEF (OG2) Hras-Myc D9 Rep1
GSM6576012
OSKM MEF (OG2) Hras-Myc D9 Rep2
GSM6576013
OSKM MEF (OG2) p53DD-E1A D0 Rep1
GSM6576014
OSKM MEF (OG2) p53DD-E1A D0 Rep2
GSM6576015
OSKM MEF (OG2) p53DD-E1A D12 Rep1
GSM6576016
OSKM MEF (OG2) p53DD-E1A D15 Rep1
GSM6576017
OSKM MEF (OG2) p53DD-E1A D3 Rep1
GSM6576018
OSKM MEF (OG2) p53DD-E1A D3 Rep2
GSM6576019
OSKM MEF (OG2) p53DD-E1A D6 Rep1
GSM6576020
OSKM MEF (OG2) p53DD-E1A D6 Rep2
GSM6576021
OSKM MEF (OG2) p53DD-E1A D9 Rep1
GSM6576022
OSKM MEF (OG2) p53DD-E1A D9 Rep2
GSM6576023
OSKM MEF (OG2) p53DD-Myc D0 Rep1
GSM6576024
OSKM MEF (OG2) p53DD-Myc D12 Rep1
GSM6576025
OSKM MEF (OG2) p53DD-Myc D15 Rep1
GSM6576026
OSKM MEF (OG2) p53DD-Myc D3 Rep1
GSM6576027
OSKM MEF (OG2) p53DD-Myc D6 Rep1
GSM6576028
OSKM MEF (OG2) p53DD-Myc D9 Rep1
GSM6576029
iPSC-like p53DD-Myc vc GFP+ line #1
GSM6576030
iPSC-like p53DD-Myc vc GFP+ line #2
GSM6576031
OSKM MEF (OG2) SV40T D0 Rep1
GSM6576032
OSKM MEF (OG2) SV40T D0 Rep2
GSM6576033
OSKM MEF (OG2) SV40T D0 Rep3
GSM6576034
OSKM MEF (OG2) SV40T D12 Rep1
GSM6576035
OSKM MEF (OG2) SV40T D12 Rep2
GSM6576036
OSKM MEF (OG2) SV40T D15 Rep1
GSM6576037
OSKM MEF (OG2) SV40T D15 Rep2
GSM6576038
OSKM MEF (OG2) SV40T D3 Rep1
GSM6576039
OSKM MEF (OG2) SV40T D3 Rep2
GSM6576040
OSKM MEF (OG2) SV40T D6 Rep1
GSM6576041
OSKM MEF (OG2) SV40T D6 Rep2
GSM6576042
OSKM MEF (OG2) SV40T D9 Rep1
GSM6576043
OSKM MEF (OG2) SV40T D9 Rep2
GSM6576044
iPSC-like SV40T chir-pd-y-bix GFP+ line #1
GSM6576045
iPSC-like SV40T vc-chir-pd-bix GFP+ line #1
GSM6576046
iPSC-like SV40T vc-chir-pd-y-bix GFP+ line #1
GSM6576047
iPSC-like SV40T vc-chir-pd-y GFP+ line #1
GSM6576048
iPSC-like SV40T vc-pd-y-bix GFP+ line #1
GSM6576049
OSKM MEF (OG2) WT D12 Rep1
GSM6576050
OSKM MEF (OG2) WT D15 Rep1
GSM6576051
OSKM MEF (OG2) WT D3 Rep1
GSM6576052
OSKM MEF (OG2) WT D6 Rep1
GSM6576053
OSKM MEF (OG2) WT D9 Rep1
GSM6576054
iPSC WT chir-pd-y-bix GFP+ line #1
GSM6576055
iPSC WT vc-chir-pd-bix GFP+ line #1
GSM6576056
iPSC WT vc-chir-pd-y-bix GFP+ line #1
GSM6576057
iPSC WT vc-chir-pd-y GFP+ line #1
GSM6576058
iPSC WT vc-chir-y-bix GFP+ line #1
GSM6576059
iPSC WT vc-pd-y-bix GFP+ line #1
This SuperSeries is composed of the following SubSeries:
GSE213167
Factors controlling somatic reprogramming of transformed tumorigeneic cells to induced pluripotent-like stem cells [ATAC-seq]
GSE213224
Factors controlling somatic reprogramming of transformed tumorigeneic cells to induced pluripotent-like stem cells [RNA-Seq]
Relations
BioProject
PRJNA879783
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SOFT
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