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Series GSE213219 Query DataSets for GSE213219
Status Public on May 09, 2023
Title Tumor-intrinsic ST3GAL3 Activity Blunts Anti-tumor Immune and Drives Immunotherapy Resistance
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary ST3GAL3 is a α2,3-sialyltransferase and involves in α2,3 sialylation in tumors; however, its role in the tumorigenic capacity of malignant cells and anti-tumor immune remains largely unexplored. Here, HM1 cells were stably transfected using lentivirus expressing a shRNA targeting ST3GAL3 (HM1-shST3GAL3) or scramble shRNA as control (HM1-shControl). Then, HM1-shControl or HM1-shST3GAL3 cells were injected into the right flank of B6C3F1 mice using a 27 g needle. ST3GAL3 knockdown significantly compromised tumor growth at a immune-dependant manner. Mechanistically, ST3GAL3 knockdown enhances pro-inflammatory phenotype of macrophages, leading ultimately to activation and recruitmentof CD8+ T cells. Moreover, we identified ST3GAL3 as a potential novel biomarker for bevacizumab or immune checkpoint blockade (ICB) intervention. ST3GAL3 knockdown in tumors also be useful to improve cancer immunotherapies.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for HM1 cells (HM1-shControl, n = 3) and its ST3GAL3 knockdown derivatives (HM1-shST3GAL3, n = 3). Comparative gene expression profiling analysis of RNA-seq data for shControl tumor tissues (shControl tumors, n = 3) and shST3GAL3 tumor tissues (shST3GAL3 tumors, n = 3).
 
Contributor(s) Liu H, Cao K
Citation(s) 37172314
Submission date Sep 12, 2022
Last update date Aug 11, 2023
Contact name Haiou Liu
E-mail(s) liuhaiou@fudan.edu.cn
Phone +8613916273769
Organization name Fudan University
Street address No.128, Shengyang road, Yangpu distinct, Shanghai, P. R. China.
City Shanghai
ZIP/Postal code 200000
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM6574587 HM1-shControl-1
GSM6574588 HM1-shControl-2
GSM6574589 HM1-shControl-3
Relations
BioProject PRJNA879768

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE213219_RAW.tar 14.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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