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Series GSE212891 Query DataSets for GSE212891
Status Public on Jun 14, 2023
Title Analysis of microbiota composition within breast tumor and healthy breast tissues in males and females
Organisms Homo sapiens; other sequences
Experiment type Other
Summary Total DNA was extracted from FFPE specimens of breast tumor and surrounding healthy tissue, amplified to collect amplicons of variable V3–V4 regions of the bacterial 16s rRNA gene and sequenced with MiSeq (2x300bp) Illumina platform.
Overall design Differential analysis of microbial abundance at different taxonomic ranks
Contributor(s) Rramazzotti M, Amedei A, Baldi S, di Gloria L
Citation(s) 37277847
Submission date Sep 08, 2022
Last update date Jun 14, 2023
Contact name Matteo Ramazzotti
Organization name University of Florence
Department Experimental and Clinical Biomedical Sciences
Street address viale Morgagni 50
City Firenze
ZIP/Postal code 50134
Country Italy
Platforms (2)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL32642 Illumina MiSeq (other sequences)
Samples (41)
GSM6560565 Tumor sample of female patient 1
GSM6560566 Tumor sample of female patient 2
GSM6560567 Tumor sample of female patient 3
BioProject PRJNA877831

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE212891_otus.fasta.gz 161.0 Kb (ftp)(http) FASTA
GSE212891_otutable.txt.gz 27.3 Kb (ftp)(http) TXT
GSE212891_taxa.txt.gz 16.2 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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