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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 09, 2024 |
| Title |
CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38335290 |
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| Submission date |
Aug 25, 2022 |
| Last update date |
Feb 15, 2024 |
| Contact name |
Lucia Daxinger |
| E-mail(s) |
L.Clemens-Daxinger@lumc.nl
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| Organization name |
Leiden Univeristy Medica Center
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| Street address |
Albinusdreef 2
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| City |
Leiden |
| ZIP/Postal code |
2333ZA |
| Country |
Netherlands |
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| Platforms (3) |
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| Samples (36)
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| GSM6505960 |
Cerebrum, WT, H3K4me3, rep2 |
| GSM6505961 |
Cerebrum, Cdca7G305V/G305V, H3K4me3 rep1 |
| GSM6505962 |
Cerebrum, Cdca7G305V/G305V, H3K4me3,rep2 |
| GSM6505963 |
Cerebrum, input, H3K4me3 |
| GSM6505983 |
Spleen, WT, H3K9me3, rep1 |
| GSM6505984 |
Spleen, WT, H3K9me3, rep2 |
| GSM6505985 |
Spleen, Cdca7G305V/G305V, H3K9me3, rep1 |
| GSM6505986 |
Spleen, Cdca7G305V/G305V, H3K9me3, rep2 |
| GSM6505987 |
Spleen, input, H3K9me3 |
| GSM6505988 |
Spleen, WT, H3K27me3, rep1 |
| GSM6505989 |
Spleen, WT, H3K27me3, rep2 |
| GSM6505990 |
Spleen, Cdca7G305V/G305V, H3K27me3, rep1 |
| GSM6505991 |
Spleen, Cdca7G305V/G305V, H3K27me3, rep2 |
| GSM6505992 |
Spleen, input, H3K27me3 |
| GSM6506008 |
Spleen, RNA, WT, rep1 |
| GSM6506009 |
Spleen, RNA, WT, rep2 |
| GSM6506010 |
Spleen, RNA, WT, rep3 |
| GSM6506011 |
Spleen, RNA, Cdca7G305V/G305V, rep1 |
| GSM6506012 |
Spleen, RNA, Cdca7G305V/G305V, rep2 |
| GSM6506013 |
Spleen, RNA, Cdca7G305V/G305V, rep3 |
| GSM6507301 |
WGBS, WT, rep1 |
| GSM6507302 |
WGBS, WT, rep2 |
| GSM6507303 |
WGBS, Cdca7G305V/G305V, rep1 |
| GSM6507304 |
WGBS, Cdca7G305V/G305V, rep2 |
| GSM6507305 |
snRNA, Cerebrum, WT, rep1 |
| GSM6507306 |
snRNA, Cerebrum, WT, rep2 |
| GSM6507307 |
snRNA, Cerebrum, Cdca7G305V/G305V, rep1 |
| GSM6507308 |
snRNA, Cerebrum, Cdca7G305V/G305V, rep2 |
| GSM7869032 |
Cerebrum, WT, H3K27me3 |
| GSM7869033 |
Cerebrum, Cdca7G305V/G305V, H3K27me3 |
| GSM7869034 |
Cerebrum, input, H3K27me3 |
| GSM7912214 |
E8.5 embryo, WT, ONT adaptive sampling |
| GSM7912215 |
E8.5 embryo, Cdca7G305V/G305V, ONT adaptive sampling |
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| This SuperSeries is composed of the following SubSeries:
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| GSE211941 |
CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses [ATAC-seq] |
| GSE211943 |
CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses [H3K4me3_brain] |
| GSE211947 |
CDCA7-associated global aberrantDNA hypomethylation translates to localized, tissue-specific transcriptional responses [H3K9me3_H3K27me3_Spleen] |
| GSE211950 |
CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses [RNA_seq_Spleen] |
| GSE212005 |
CDCA7-associated global aberranDNA hypomethylation translates to localized, tissue-specific transcriptional responses [WGBS] |
| GSE212006 |
CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses [snRNA-seq] |
| GSE246450 |
CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses [ChIP-seq] |
| GSE248370 |
CDCA7-associated global aberrant DNA hypomethylation translates to localized, tissue-specific transcriptional responses [ONT adaptive sampling] |
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| Relations |
| BioProject |
PRJNA873266 |
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