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| Status |
Public on Apr 27, 2023 |
| Title |
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37277355 |
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| Submission date |
Aug 23, 2022 |
| Last update date |
Jul 28, 2023 |
| Contact name |
Filippo M. RIJLI |
| Organization name |
Friedrich Miescher Institute for Biomedical Research
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| Street address |
Maulbeerstrasse 66
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| City |
Basel |
| ZIP/Postal code |
4058 |
| Country |
Switzerland |
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| Platforms (3) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (67)
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| GSM6505177 |
ATAC_WT_E12.5_Pinna_2 |
| GSM6505178 |
ATAC_WT_E12.5_Pinna_3 |
| GSM6505179 |
ATAC_WT_E14.5_Pinna_1 |
| GSM6505180 |
ATAC_WT_E14.5_Pinna_2 |
| GSM6505181 |
ATAC_WT_E14.5_Pinna_3 |
| GSM6505182 |
ATAC_WT_E14.5_Pinna_4 |
| GSM6505183 |
ATAC_WT_E14.5_Pinna_5 |
| GSM6505184 |
H3K27ac, wt, E12.5, Pinna |
| GSM6505185 |
H3K27ac, rep2, wt, E12.5_Pinna |
| GSM6505186 |
H3K4me2, wt, E12.5, Pinna |
| GSM6505187 |
H3K4me2, rep2, wt, E12.5, Pinna |
| GSM6505188 |
H3K27me3, wt, E12.5, Pinna |
| GSM6505189 |
H3K27me3, rep2, wt, E12.5, Pinna |
| GSM6505190 |
H3K27ac, wt, E14.5, Pinna |
| GSM6505191 |
H3K27ac, rep2, wt, E14.5, Pinna |
| GSM6505192 |
H3K4me2, wt, E14.5, Pinna |
| GSM6505193 |
H3K4me2, rep2, wt, E14.5, Pinna |
| GSM6505194 |
H3K27me3, wt, E14.5, Pinna |
| GSM6505195 |
H3K27me3, rep2, wt, E14.5, Pinna |
| GSM6505196 |
CTCF, E10.5, PA2 |
| GSM6505197 |
CTCF, E10.5, Md |
| GSM6505198 |
Hi-C WT E10.5 Md 1 |
| GSM6505199 |
Hi-C WT E10.5 PA2 1 |
| GSM6505200 |
Hi-C WT E12.5 Pinna 1 |
| GSM6505201 |
Hi-C WT E12.5 Pinna 2 |
| GSM6505202 |
Hi-C WT E14.5 Pinna 1 |
| GSM6505203 |
Hi-C WT E14.5 Pinna 2 |
| GSM6505204 |
PCHi-C_WT_E10.5_FNP_1 |
| GSM6505205 |
PCHi-C_WT_E10.5_FNP_2 |
| GSM6505206 |
PCHi-C_WT_E10.5_Mx_1 |
| GSM6505207 |
PCHi-C_WT_E10.5_Mx_2 |
| GSM6505208 |
PCHi-C_WT_E10.5_Md_1 |
| GSM6505209 |
PCHi-C_WT_E10.5_Md_2 |
| GSM6505210 |
PCHi-C_WT_E10.5_PA2_1 |
| GSM6505211 |
PCHi-C_WT_E10.5_PA2_2 |
| GSM6505212 |
PCHi-C_KO_E10.5_PA2_1 |
| GSM6505213 |
PCHi-C_KO_E10.5_PA2_2 |
| GSM6505214 |
PCHi-C_WT_E12.5_Pinna_1 |
| GSM6505215 |
PCHi-C_WT_E12.5_Pinna_2 |
| GSM6505216 |
PCHi-C_WT_E14.5_Pinna_1 |
| GSM6505217 |
PCHi-C_WT_E14.5_Pinna_2 |
| GSM6505218 |
RNAseq E10.5-PA2 1 |
| GSM6505219 |
RNAseq E10.5-PA2 2 |
| GSM6505220 |
RNAseq E10.5-PA2 3 |
| GSM6505221 |
RNAseq E12.5-Pinna 1 |
| GSM6505222 |
RNAseq E12.5-Pinna 2 |
| GSM6505223 |
RNAseq E12.5-Pinna 3 |
| GSM6505224 |
RNAseq E14.5-Pinna 1 |
| GSM6505225 |
RNAseq E14.5-Pinna 2 |
| GSM6505226 |
RNAseq E14.5-Pinna 3 |
| GSM6505227 |
RNAseq E10.5 PA2 wt 1 |
| GSM6505228 |
RNAseq E10.5 PA2 wt 2 |
| GSM6505229 |
RNAseq E10.5 PA2 wt 3 |
| GSM6505230 |
RNAseq E10.5 PA3 wt 1 |
| GSM6505231 |
RNAseq E10.5 PA3 wt 2 |
| GSM6505232 |
RNAseq E10.5 PA3 wt 3 |
| GSM6505233 |
RNAseq E10.5 PA2 delta-E3 1 |
| GSM6505234 |
RNAseq E10.5 PA2 delta-E3 2 |
| GSM6505235 |
RNAseq E10.5 PA2 delta-E3 3 |
| GSM6505236 |
RNAseq E10.5 PA3 delta-E3 1 |
| GSM6505237 |
RNAseq E10.5 PA3 delta-E3 2 |
| GSM6505238 |
RNAseq E10.5 PA3 delta-E3 3 |
| GSM7245933 |
mESC HiC rep1 |
| GSM7245934 |
mESC HiC rep2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE211899 |
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest [ATAC-seq] |
| GSE211900 |
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest [ChIP-seq] |
| GSE211901 |
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest [Hi-C] |
| GSE211902 |
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest [PCHi-C] |
| GSE211903 |
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest [RNA-seq] |
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| Relations |
| BioProject |
PRJNA872525 |
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