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Series GSE211858 Query DataSets for GSE211858
Status Public on Aug 26, 2022
Title Cross-amplified Barcodes on Slides for Spatial Transcriptomics Sequencing
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary Using microfluidics, well-defined barcodes were generated on the slide surface by cross-amplification, followed by high-throughput sequencing using Novaseq to detect spatial transcriptomic information in the mouse brain.
 
Overall design Applying new approach – cross-amplified barcodes on slides for spatial transcriptomics sequencing to mouse brain tissues.
 
Contributor(s) Jin ZY, Yu NZ, Bai JD, Liu ZY, Liu HR, Zhang JH, Liang CY
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA871370
Submission date Aug 23, 2022
Last update date Sep 22, 2022
Contact name Zhengyang Jin
E-mail(s) jinzy21@mails.jlu.edu.cn
Organization name Jilin University
Street address No. 1163 Xinmin Street
City Changchun
State/province Jilin
ZIP/Postal code 130021
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (1)
GSM6504379 RNA-Seq of mus musculus:adult male brain (CBSST-Seq)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211858_RAW.tar 30.3 Mb (http)(custom) TAR (of MTX, TAR, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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