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Series GSE211473 Query DataSets for GSE211473
Status Public on Jan 06, 2023
Title Genome-wide analysis of histone modification in UPCI-SCC-090, UM-SCC-104, FaDu and NP69SV40T.
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We analysed active enhancers in UPCI-SCC-090, UM-SCC-104, FaDu and NP69SV40T by performing ChIP-seq on H3K4me3, H3K4me1 and H3K27ac.
 
Overall design Examination of active enhancers.
 
Contributor(s) Mima M, Okabe A, Hoshii T, Nakagawa T, Kurokawa T, Kondo S, Mizokami H, Fukuyo M, Fujiki R, Rahmutulla B, Yoshizaki T, Hanazawa T, Misawa K, Kaneda A
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Submission date Aug 17, 2022
Last update date Jan 08, 2023
Contact name Masaki Fukuyo
E-mail(s) fukuyo@chiba-u.jp
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platforms (3)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (40)
GSM6473171 UPCI-SCC-090_WT_H3K4me1_replication1
GSM6473172 UPCI-SCC-090_WT_H3K4me3_replication1
GSM6473173 UPCI-SCC-090_WT_H3K27ac_replication1
This SubSeries is part of SuperSeries:
GSE211489 Tumorigenic activation around HPV integrated sites in head and neck squamous cell carcinoma
Relations
BioProject PRJNA870481

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211473_RAW.tar 11.3 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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