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Series GSE211322 Query DataSets for GSE211322
Status Public on Jan 06, 2023
Title RNA-seq of head and neck cell lines
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Two HPV(+) head and neck cancer cell lines (UPCI-SCC-090, UM-SCC-104), one HPV(–) head and neck cancer cell line (FaDu) and one nasopharyngeal epithelial cell line (NP69SV40T) were subjected to RNA-seq analysis.
Overall design Transcriptome analysis
Contributor(s) Mima M, Okabe A, Hoshii T, Nakagawa T, Kurokawa T, Kondo S, Mizokami H, Fukuyo M, Fujiki R, Rahmutulla B, Yoshizaki T, Hanazawa T, Misawa K, Kaneda A
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Submission date Aug 15, 2022
Last update date Jan 07, 2023
Contact name Masaki Fukuyo
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
Platforms (3)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
GSM6466080 UPCI-SCC-090_WT_replication1
GSM6466081 UPCI-SCC-090_WT_replication2
GSM6466082 UM-SCC-104_WT_replication1
This SubSeries is part of SuperSeries:
GSE211489 Tumorigenic activation around HPV integrated sites in head and neck squamous cell carcinoma
BioProject PRJNA869761

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211322_genes.fpkm_tracking.txt.gz 1.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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