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GEO accession:
Series GSE211238
Query DataSets for GSE211238
Status
Public on Aug 18, 2022
Title
Multipartite super-enhancers function in an orientation-dependent manner
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Aug 15, 2022
Last update date
Aug 21, 2022
Contact name
Mira Tony Kassouf
E-mail(s)
mira.kassouf@imm.ox.ac.uk
Organization name
University of Oxford
Department
Weatherall Institute of Molecular Medicine
Lab
Doug Higgs
Street address
John Radcliffe Hospital, Headly way
City
Oxford
State/province
England
ZIP/Postal code
OX3 9DS
Country
United Kingdom
Platforms (2)
GPL16417
Illumina MiSeq (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (93)
Less...
More...
GSM6456399
EB_CD71_WT_ATAC_1
GSM6456400
EB_CD71_WT_ATAC_2
GSM6456401
EB_CD71_WT_ATAC_3
GSM6456402
EB_CD71_INVEN_ATAC_1
GSM6456403
EB_CD71_INVEN_ATAC_2
GSM6456404
EB_CD71_INVEN_ATAC_3
GSM6456405
EB_CD71_INVEN_KO_ATAC_1
GSM6456406
EB_CD71_INVEN_KO_ATAC_2
GSM6456407
EB_CD71_WT_Mpg_KO_ATAC_1
GSM6456408
EB_CD71_WT_Mpg_KO_ATAC_2
GSM6456409
EB_CD71_WT_Mpg_KO_ATAC_3
GSM6456410
EB_CD71_CTCF_KO_Mpg_KO_ATAC_1
GSM6456411
EB_CD71_INVEN_Mpg_KO_ATAC_1
GSM6456412
EB_CD71_INVEN_Mpg_KO_ATAC_2
GSM6456413
EB_CD71_INVEN_Mpg_KO_ATAC_3
GSM6456414
EB_CD71_INVEN_KO_Mpg_KO_ATAC_1
GSM6456415
EB_CD71_DelR1_ATAC_1
GSM6456416
EB_CD71_DelR1_ATAC_2
GSM6456417
EB_CD71_DelR1_ATAC_3
GSM6456418
EB_CD71_DelR1_INVR2_ATAC_1
GSM6456419
EB_CD71_DelR1_INVR2_ATAC_2
GSM6456420
EB_CD71_DelR1_INVR2_ATAC_3
GSM6456421
APHSpleen_INVEN_Ter119_ATAC_1
GSM6456422
APHSpleen_INVEN_Ter119_ATAC_2
GSM6456423
APHSpleen_INVEN_Ter119_ATAC_3
GSM6456424
WT EBd7 CD71+ R1 Capture sample1 (WT_EB8_Enhancers)
GSM6456425
WT EBd7 CD71+ R1 Capture sample2 (WT_EB9_Enhancers)
GSM6456426
WT EBd7 CD71+ R1 Capture sample3 (WT_EB11_Enhancers)
GSM6456427
INVEN EBd7 CD71+ R1 Capture sample 1(INVEN_EB10_Enhancers)
GSM6456428
INVEN EBd7 CD71+ R1 Capture sample 2 (INVEN_EB19_Enhancers)
GSM6456429
INVEN EBd7 CD71+ R1 Capture sample 3 (INVEN_EB22_Enhancers)
GSM6456430
CTCFKO EBd7 CD71+ R1 Capture sample 1 (CTCFKO_A3_Enhancers)
GSM6456431
CTCFKO EBd7 CD71+ R1 Capture sample 2 (CTCFKO_A81_Enhancers)
GSM6456432
CTCFKO EBd7 CD71+ R1 Capture sample 3 (CTCFKO_A82_Enhancers)
GSM6456433
INVEN_KO EBd7 CD71+ R1 Capture sample 1 (INVEN_KO_C2_Enhancers)
GSM6456434
INVEN_KO CD71+ R1 Capture sample 2 (INVEN_KO_C12_Enhancers)
GSM6456435
INVEN_KO CD71+ R1 Capture sample 3 (INVEN_KO_C12_Enhancers)
GSM6456436
CTCFKO_MpgKO_EBd7 CD71+ R1 Capture sample 1 (INVEN_KO_MpgKO_B7_Enhancers)
GSM6456437
CTCFKO_MpgKO_EBd7 CD71+ R1 Capture sample 2 (INVEN_KO_MpgKO_B7_Enhancers)
GSM6456438
CTCFKO_MpgKO_EBd7 CD71+ R1 Capture sample 3 (INVEN_KO_MpgKO_B7_Enhancers)
GSM6456439
INVEN_KO_MpgKO_EBd7 CD71+ R1 Capture sample 1 (INVEN_KO_MpgKO_B12_Enhancers)
GSM6456440
INVEN_KO_MpgKO_EBd7 CD71+ R1 Capture sample 2 (INVEN_KO_MpgKO_B12_Enhancers)
GSM6456441
INVEN_KO_MpgKO_EBd7 CD71+ R1 Capture sample 3 (INVEN_KO_MpgKO_B12_Enhancers)
GSM6456442
INVEN_APHSpleen_R1_Enhancer_Capture_Sample 1
GSM6456443
INVEN_APHSpleen_R1_Enhancer_Capture_Sample 2
GSM6456444
INVEN_APHSpleen_R1_Enhancer_Capture_Sample 3
GSM6456445
INVEN_APHSpleen_HS3839_CTCF_Capture_Sample 1
GSM6456446
INVEN_APHSpleen_HS3839_CTCF_Capture_Sample 2
GSM6456447
INVEN_APHSpleen_HS3839_CTCF_Capture_Sample 3
GSM6456448
WT_APHSpleen_HS4448_CTCF_Capture_Sample 1
GSM6456449
WT_APHSpleen_HS4448_CTCF_Capture_Sample 2
GSM6456450
WT_APHSpleen_HS4448_CTCF_Capture_Sample 3
GSM6456451
INVEN_APHSpleen_HS4448_CTCF_Capture_Sample 1
GSM6456452
INVEN_APHSpleen_HS4448_CTCF_Capture_Sample 2
GSM6456453
INVEN_APHSpleen_HS4448_CTCF_Capture_Sample 3
GSM6456454
WT_APHSpleen_Alpha5Pr_Capture_Sample 1
GSM6456455
WT_APHSpleen_Alpha5Pr_Capture_Sample 2
GSM6456456
WT_APHSpleen_Alpha5Pr_Capture_Sample 3
GSM6456457
INVEN_APHSpleen_Alpha5Pr_Capture_Sample 1
GSM6456458
INVEN_APHSpleen_Alpha5Pr_Capture_Sample 2
GSM6456459
INVEN_APHSpleen_Alpha5Pr_Capture_Sample 3
GSM6456460
WT_APHSpleen_Promoter_Capture_Sample 1
GSM6456461
WT_APHSpleen_Promoter_Capture_Sample 2
GSM6456462
WT_APHSpleen_Promoter_Capture_Sample 3
GSM6456463
INVEN_APHSpleen_Promoter_Capture_Sample 1
GSM6456464
INVEN_APHSpleen_Promoter_Capture_Sample 2
GSM6456465
INVEN_APHSpleen_Promoter_Capture_Sample 3
GSM6456466
WT12_APHSpleen_SE_Capture_Sample 1
GSM6456467
WT4_APHSpleen_SE_Capture_Sample 2
GSM6456468
WT2_APHSpleen_SE_Capture_Sample 3
GSM6456469
WT23_mESC_SE_Capture_Sample 1
GSM6456470
WT25_mESC_SE_Capture_Sample 2
GSM6456471
WT27_mESC_SE_Capture_Sample 3
GSM6457548
EB_CD71_INVEN_CTCF_1
GSM6457549
EB_CD71_INVEN_CTCF_2
GSM6457550
EB_CD71_CTCF_KO_CTCF_1
GSM6457552
EB_CD71_CTCF_KO_CTCF_2
GSM6457553
EB_CD71_INVEN_KO_CTCF_1
GSM6457555
EB_CD71_INVEN_KO_CTCF_2
GSM6457556
APHSpleen_INVEN_Ter119_CTCF_1
GSM6457557
APHSpleen_INVEN_Ter119_CTCF_2
GSM6457559
APHSpleen_INVEN_Ter119_H3K4me3_1
GSM6457560
APHSpleen_INVEN_Ter119_H3K4me3_2
GSM6457561
APHSpleen_INVEN_Ter119_H3K4me3_3
GSM6457563
APHSpleen_INVEN_Ter119_H3K27me3_1
GSM6457564
APHSpleen_INVEN_Ter119_H3K27me3_2
GSM6457566
APHSpleen_INVEN_Ter119_H3K27me3_3
GSM6458048
APHSpleen_WT_Ter119_RNASEQ_1
GSM6458049
APHSpleen_WT_Ter119_RNASEQ_2
GSM6458051
APHSpleen_WT_Ter119_RNASEQ_3
GSM6458052
APHSpleen_INVEN_Ter119_RNASEQ_1
GSM6458053
APHSpleen_INVEN_Ter119_RNASEQ_2
GSM6458055
APHSpleen_INVEN_Ter119_RNASEQ_3
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE211232
Multipartite super-enhancers function in an orientation-dependent manner [ATAC-Seq]
GSE211233
Multipartite super-enhancers function in an orientation-dependent manner [Capture-C]
GSE211236
Multipartite super-enhancers function in an orientation-dependent manner [ChIP-Seq]
GSE211237
Multipartite super-enhancers function in an orientation-dependent manner [RNA-Seq]
Relations
BioProject
PRJNA869663
Download family
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TXT
Supplementary file
Size
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File type/resource
GSE211238_RAW.tar
5.9 Gb
(http)
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TAR (of BW, TAB)
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