 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Dec 31, 2023 |
| Title |
Spatial transcriptomic studies of the colon from a wildtype mouse |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Transcriptomic analysis of the colon from a wildtype 8 week old female mice in C57BL6 background. In particular, we characterized the expression of genes encoding known receptors for Regenerating islet-derived proteins (REG3III) among the different colonic intestinal epithelial cell subsets under steady state. Colonic DCLK1+ tuft cell-containing spots had the highest expression levels of genes encoding various REG3III receptors.
|
| |
|
| Overall design |
One entire colon tissue was obtained from a steady state female 8wk-old wildtype mouse.
|
| |
|
| Contributor(s) |
Hernandez J, Huang WJ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 10, 2022 |
| Last update date |
Jan 01, 2024 |
| Contact name |
Wendy Huang |
| E-mail(s) |
wjh003@ucsd.edu
|
| Organization name |
University of California San Diego
|
| Department |
Cellular and Molecular Medicine
|
| Street address |
9500 Gilman Drive #0651
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (1) |
|
| Relations |
| BioProject |
PRJNA868400 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE210973_RAW.tar |
53.3 Mb |
(http)(custom) |
TAR (of CSV, MTX, TIFF, TSV, XLSX) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
