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Series GSE210556 Query DataSets for GSE210556
Status Public on Apr 21, 2023
Title Longitudinal RNA-seq of Gene-edited Porcine Kidneys in Cynomolgus Macaques
Organism Sus scrofa
Experiment type Expression profiling by high throughput sequencing
Summary Succesful xenotransplantation of porcine kidneys into humans requires durable expression of certain human transgenes. In order to ensure robust expression through the life of the transplanted kidney, RNA-seq was performed on gene-edited kidneys prior to and during transplantation into cynomolgus macaques. Analysis of this longitudinal transcriptomics data shows robust and stable transgene expression through the lifespan of numerous xenotransplanted organs.
 
Overall design Illumina polyA RNA-seq was performed on gene-edited porcine kidney biopsies prior to and during transplant into cynomolgus macaques.
 
Contributor(s) Chhangawala S, Policastro RA
Citation(s) 37311769, 37821590
Submission date Aug 04, 2022
Last update date Oct 26, 2023
Contact name Robert Policastro
Organization name Ensoma Inc.
Street address 451 D St Unit #600
City Boston
State/province Massachusetts
ZIP/Postal code 02210
Country USA
 
Platforms (1)
GPL32549 NextSeq 2000 (Sus scrofa)
Samples (29)
GSM6432435 M10619 Kidney Cortex Biopsy POD9
GSM6432436 M10619 Kidney Cortex Contralateral POD0
GSM6432437 M2220 Kidney Cortex Contralateral POD0
This SubSeries is part of SuperSeries:
GSE211432 Life-supporting function of genome edited porcine renal graft in cynomolgus macaques
Relations
BioProject PRJNA866161

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE210556_PL15S.fa.gz 7.8 Kb (ftp)(http) FA
GSE210556_PL15S.gtf.gz 633 b (ftp)(http) GTF
GSE210556_RAW.tar 899.9 Mb (http)(custom) TAR (of TAR)
GSE210556_kidney_rnaseq.RDS.gz 6.5 Mb (ftp)(http) RDS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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