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| Status |
Public on Dec 15, 2022 |
| Title |
Transcriptome analysis of Acartia tonsa embryogenesis and its quiescent stage |
| Organism |
Acartia tonsa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Copepods from the species Acartia tonsa, like other 41 members of Calanoida order, have the unique ability to induce quiescence in different stages during their lifetime if adverse environmental conditions occur. Here I assembled a de novo transcriptome for subitaneous and quiescent embryonic development to reconstruct the molecular processes occurring in the embryogenesis. This dataset provides a better understanding of A. tonsa embryonic development and the molecular mechanisms underlying quiescence.
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| Overall design |
Differential expression analysis for RNA-seq data from an assemblage of eggs of Acartia tonsa. With six timepoints (3, 7, 14, 24 and 42 hours subitaneous development and 26 hours quiescent development) and 3-5 technical replicates per timepoint
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| Contributor(s) |
Cifuentes Acebal M, JØrgensen TS, Hansen BW, Daalgard LT |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Aug 04, 2022 |
| Last update date |
Dec 15, 2022 |
| Contact name |
Miguel Cifuentes Acebal |
| Organization name |
Roskilde university
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| Department |
Department of Science and Environment
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| Street address |
Universitetsvej 1
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| City |
Roskilde |
| State/province |
Sjaelland |
| ZIP/Postal code |
4000 |
| Country |
Denmark |
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| Platforms (1) |
| GPL32548 |
Illumina NextSeq 500 (Acartia tonsa) |
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| Samples (26)
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| GSM6432373 |
Assemblage of eggs, 3 Hours, Subitaneous, Replicate A |
| GSM6432374 |
Assemblage of eggs, 3 Hours, Subitaneous, Replicate B |
| GSM6432375 |
Assemblage of eggs, 3 Hours, Subitaneous, Replicate C |
| GSM6432376 |
Assemblage of eggs, 3 Hours, Subitaneous, Replicate D |
| GSM6432377 |
Assemblage of eggs, 3 Hours, Subitaneous, Replicate E |
| GSM6432378 |
Assemblage of eggs, 7 hours, Subitaneous, Replicate A |
| GSM6432379 |
Assemblage of eggs, 7 hours, Subitaneous, Replicate B |
| GSM6432380 |
Assemblage of eggs, 7 hours, Subitaneous, Replicate C |
| GSM6432381 |
Assemblage of eggs, 7 hours, Subitaneous, Replicate D |
| GSM6432382 |
Assemblage of eggs, 7 hours, Subitaneous, Replicate E |
| GSM6432383 |
Assemblage of eggs, 14 hours, Subitaneous, Replicate A |
| GSM6432384 |
Assemblage of eggs, 14 hours, Subitaneous, Replicate B |
| GSM6432385 |
Assemblage of eggs, 14 hours, Subitaneous, Replicate C |
| GSM6432386 |
Assemblage of eggs, 14 hours, Subitaneous, Replicate E |
| GSM6432387 |
Assemblage of eggs, 24 hours, Subitaneous, Replicate A |
| GSM6432388 |
Assemblage of eggs, 24 hours, Subitaneous, Replicate B |
| GSM6432389 |
Assemblage of eggs, 24 hours, Subitaneous, Replicate C |
| GSM6432390 |
Assemblage of eggs, 24 hours, Subitaneous, Replicate D |
| GSM6432391 |
Assemblage of eggs, 42 hours, Subitaneous, Replicate A |
| GSM6432392 |
Assemblage of eggs, 42 hours, Subitaneous, Replicate B |
| GSM6432393 |
Assemblage of eggs, 42 hours, Subitaneous, Replicate C |
| GSM6432394 |
Assemblage of eggs, 42 hours, Subitaneous, Replicate D |
| GSM6432395 |
Assemblage of eggs, 42 hours, Subitaneous, Replicate E |
| GSM6432396 |
Assemblage of eggs, 26 hours, Quiescent, Replicate A |
| GSM6432397 |
Assemblage of eggs, 26 hours, Quiescent, Replicate C |
| GSM6432398 |
Assemblage of eggs, 26 hours, Quiescent, Replicate D |
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| Relations |
| BioProject |
PRJNA866147 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE210554_Transcriptome.annotated.fasta.gz |
30.9 Mb |
(ftp)(http) |
FASTA |
| GSE210554_diffExpr.P0.001_C2.quiescent.matrix.gz |
178.9 Kb |
(ftp)(http) |
MATRIX |
| GSE210554_diffExpr.P0.001_C2.subitaneous.matrix.gz |
585.7 Kb |
(ftp)(http) |
MATRIX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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