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Series GSE210181 Query DataSets for GSE210181
Status Public on Sep 16, 2022
Title Probing cell identity hierarchies by fate titration and collision during direct reprogramming [Cut & Tag]
Organism Mus musculus
Experiment type Other
Summary Collide-seq: A systematic comparison of how different reprogramming transcription factors achieve conversion as well as an in-depth analysis of how cells resolve the conflict when more than one fate is instructed.
Overall design Mouse embryonic fibroblasts were nucleofected with doxycycline inducible constructs for the indicated reprogramming transcription factors. Cells were expanded for about 10 days and positive cells sorted using FACS. Transcription factor expression was induced for 72h via the administration of doxycycline. After 72h, cells were collected for CUT&RUN.
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Contributor(s) Hersbach BA, Fischer DS, Masserdotti G, Deeksha D, Mojžišová K, Waltzhöni T, Rodriques-Terrones D, Heinig M, Theis FJ, Götz M, Stricker SH
Citation(s) 36106915
Submission date Aug 01, 2022
Last update date Sep 18, 2022
Contact name Bob Hersbach
Organization name Helmholtz Zentrum Munich
Department Institute of Stem Cell Research
Street address Großhaderner Str. 9
City Planegg-Martinsried
ZIP/Postal code 82152
Country Germany
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (8)
GSM6423057 MyoD1, replicate 1,
GSM6423058 Ascl1_MyoD1, replicate 1
GSM6423059 mAscl1_MyoD1, replicate 1
This SubSeries is part of SuperSeries:
GSE211864 Probing cell identity hierarchies by fate titration and collision during direct reprogramming
BioProject PRJNA864644

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE210181_RAW.tar 306.7 Mb (http)(custom) TAR (of BIGWIG, BROADPEAK)
GSE210181_picard_deduplication.tsv.gz 345 b (ftp)(http) TSV
GSE210181_pseudoAB.consensus_peaks.featureCounts.txt.gz 208.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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