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Series GSE20976 Query DataSets for GSE20976
Status Public on Apr 07, 2010
Title Tetracycline-treated Litomosoides sigmodontis vs. untreated control Litomosoides sigmodontis
Platform organisms Brugia malayi; Onchocerca volvulus; Wuchereria bancrofti; Wolbachia endosymbiont strain TRS of Brugia malayi
Sample organism Litomosoides sigmodontis
Experiment type Expression profiling by array
Summary The filarial nematodes Brugia malayi, Wuchereria bancrofti and Onchocerca volvulus cause elephantiasis, dermatitis and blindness, resulting in severe morbidity in developing countries. 1.3 billion people are at risk of infection. Targeting the essential Wolbachia endobacteria of filarial nematodes with doxycycline has proven to be an effective therapy, resulting in a block in embryogenesis and worm development, and macrofilaricidal effects. However, doxycycline is contraindicated for a large portion of the at-risk population. To identify new targets for anti-wolbachial therapy, understanding the molecular basis of the Wolbachia-filaria symbiosis is required. We performed cross-species hybridization by using the Brugia malayi microarray to identify differentially expressed genes in the rodent filaria Litomosoides sigmodontis after depletion of Wolbachia which therefore might have a role in symbiosis.
 
Overall design Female adult Litomosoides sigmodontis from patent infections were treated with tetracycline to deplete endosymbiotic Wolbachia bacteria. RNA from tetracycline-treated Litomosoides sigmodontis was compared to untreated age-matched control worms. This experiment was performed for three different timepoints: day 6, 15 and 36 of tetracycline treatment. One biological replicate was performed each with two technical replicates (dye-flip replicates).
 
Contributor(s) Strübing U, Hoerauf A, Pfarr KM
Citation(s) 20362581
Submission date Mar 19, 2010
Last update date Mar 22, 2012
Contact name Uta Strübing
Organization name University Hospital Bonn
Department Institute for Medical Microbiology, Immunology and Parasitology
Street address Sigmund-Freud-Str. 25
City Bonn
ZIP/Postal code 53105
Country Germany
 
Platforms (1)
GPL10232 Washington University School of Medicine Microarray Core Brugia malayi microarray V.2
Samples (6)
GSM524476 6 Days Treatment, Replicate 1
GSM524477 6 Days Treatment, Replicate 2 (Dye Flip)
GSM524478 15 Days Treatment, Replicate 1
Relations
BioProject PRJNA124477

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE20976_RAW.tar 27.8 Mb (http)(custom) TAR (of CSV)
GSE20976_raw_file_readme.txt 6.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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