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Series GSE207477 Query DataSets for GSE207477
Status Public on Jul 07, 2022
Title Acidovorax temperans skews neutrophil maturation and polarizes Th17 cells to promote lung adenocarcinoma development
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Dysbiosis, or changes within the microbiome, is a common feature of solid tumors, however whether this dysbiosis directly contributes to tumor development is largely unknown. We previously characterized the lung cancer microbiome and identified the Gram-negative Acidovorax temperans as enriched in tumors and associated with smoking status and TP53 mutations. To determine if A. temperans exposure could contribute to the development of lung cancer, we investigated its effect in an animal model of lung adenocarcinoma driven by mutant Kras and Tp53 alleles. This revealed A. temperans exposure accelerates tumor development and burden through infiltration of proinflammatory cells in the lungs. Neutrophils exposed to A. temperans displayed a mature, pro-tumorigenic phenotype with increased cytokine signaling, with a global shift away from IL-1β signaling. Neutrophil to monocyte and macrophage signaling promoted maturation of the latter cell types which upregulated MHC II to activate CD4+ T cells. Activated T cells were then polarized to an IL-17A+ phenotype detectable in CD4+ and γδ populations. Furthermore, T17 cells shared a common gene expression profile predictive of poor survival in human LUAD cases. These data indicate a clear role for microbiota-induced inflammation as a key mechanism in the development of lung cancer, demonstrating that dysbiosis contributes to tumor growth.
 
Overall design CD45+ cells were sorted by FACS from tumor tissue within the mutant K-ras/p53 (KP) mouse model of lung adenocarcinoma and sent for scRNA-seq
Web link https://www.nature.com/articles/s41389-024-00513-6
 
Contributor(s) Stone JK, Khan M, Zhang C, von Muhlinen N, Harris CC
Citation(s) 38570533
Submission date Jul 05, 2022
Last update date Apr 05, 2024
Contact name Joshua Stone
E-mail(s) josh.stone@nih.gov
Organization name NIH
Street address 37 Convent Drive Room 3050
City Bethesda
State/province Maryland
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (8)
GSM6288359 At_1
GSM6288360 At_2
GSM6288361 At_3
Relations
BioProject PRJNA855893

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE207477_210730_A00774R_0189_AHYV37DMXX_supplement.tar.gz 1.8 Mb (ftp)(http) TAR
GSE207477_AggregatedDatasets.tar.gz 1.4 Gb (ftp)(http) TAR
GSE207477_RAW.tar 881.1 Mb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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