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| Status |
Public on Sep 30, 2022 |
| Title |
Parallel single cell and bulk transcriptome analyses reveal key features of the gastric tumor microenvironment |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We used single-cell RNA-sequencing from tumors and matched normal tissue of 24 treatment-naïve patients to generate a single cell landscape of gastric cancer tumor microenvironment.
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| Overall design |
48 samples from tumors and matched normal tissue of 24 treatment-naïve patients were sequenced using 10X single-cell RNA-seq platform and then analyzed.
***Please note that, due to Chinese regulations on human genetics information, the raw sequence files are deposited to the GSA Human database (ngdc.cncb.ac.cn), under Accession Number HRA002336***
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| Contributor(s) |
Kang BC, Camps J, Fan B, Jiang H, Ibrahim MM, Hu X, Qin S, Kirchhoff D, Chiang DY, Wang S, Ye Y, Shen Z, Bu Z, Zhang Z, Roider HG |
| Citation(s) |
36550535 |
| Submission date |
Jun 23, 2022 |
| Last update date |
Dec 30, 2022 |
| Contact name |
Zemin Zhang |
| E-mail(s) |
zemin@pku.edu.cn
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| Organization name |
Peking University
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| Street address |
5 Yiheyuan Rd, Haidian
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| City |
Beijing |
| ZIP/Postal code |
100871 |
| Country |
China |
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| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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| Samples (48)
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| Relations |
| BioProject |
PRJNA852186 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE206785_metadata.txt.gz |
115.6 Kb |
(ftp)(http) |
TXT |
| GSE206785_scgex.txt.gz |
235.7 Mb |
(ftp)(http) |
TXT |
| Raw data not provided for this record |
| Processed data are available on Series record |
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