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Series GSE205052 Query DataSets for GSE205052
Status Public on Jan 29, 2023
Title Spatial epigenome-transcriptome co-profiling of mammalian tissues [ATAC-Seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We present spatially resolved high-spatial-resolution genome-wide co-mapping of epigenome and transcriptome by simultaneously profiling of chromatin accessibility and gene expression (spatial-ATAC-RNA-seq), as well as histone modification and gene expression (spatial-CUT&Tag-RNA-seq) on the same tissue section at cellular level by combining the microfluidic deterministic barcoding strategy in DBiT-seq and the chemistry used in ATAC-seq/CUT&Tag.
 
Overall design Spatially resolved co-sequencing of epigenome and transcriptome in mouse embryos and mouse brains.
 
Contributor(s) Fan R, Zhang D, Deng Y
Citation(s) 36922587
Submission date May 29, 2022
Last update date Apr 14, 2023
Contact name Di Zhang
E-mail(s) di.zhang@yale.edu
Organization name Yale University
Department Biomedical Engineering
Street address 55 Prospect St
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (5)
GSM6204623 MouseBrain_20um
GSM6204624 ME13_100barcodes_25um
GSM6758284 MouseBrain_20um_rep2 ATAC
This SubSeries is part of SuperSeries:
GSE205055 Spatial epigenome-transcriptome co-profiling of mammalian tissues
Relations
BioProject PRJNA843458

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE205052_RAW.tar 4.1 Gb (http)(custom) TAR (of TAR, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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