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Series GSE204815 Query DataSets for GSE204815
Status Public on May 22, 2023
Title Lymph node medulla is a quorum sensing niche for developing dendritic cells [preDC]
Organism Mus musculus
Experiment type Other
Summary Conventional dendritic cells (cDC) and macrophages form complex networks that are essential for tissue homeostasis and immune defence. While the differentiation and residency of macrophages is regulated within distinct tissue niches, it is unclear whether DC development in tissues follows similar principles given their short life-span. By studying cDC development using fate mapping and depletion/reconstitution approaches, we found that preDC undergo distinct developmental stages. This development that preceded DC maturation was guided within the medullary cords of LNs. Intravital imaging and in situ photoconversion showed that preDC homed via medullary vessels and used them as guiding structures for their migration to the LN parenchyma. Infection-induced relocation of cDCs changed the availability of lymphocyte-derived Flt3l in the medulla which accelerated preDC development to ensure their local replenishment and responsiveness. Uncovering these principles of the spatiotemporal development of cDC and their complex cellular networks may guide novel angles for immunotherapy against cancer.
 
Overall design B6 wt mice were left untreated. Prtn3-Ert2Cre.lsl.tdTomato mice were treated either at day 3, 5 or 7 before organ harvest with tamoxifen. sdLN from all mice were isolated and digested with Collagenase D and DNase I. preDC were sorted based on CD11c, MHCII and CD135 expression using FACS AriaIII. The 4 different treatment conditions were stained with different antibody Hashtags before sorting and pooled for sequencing after the sort.

Hashtag definitions:
Hashtag1_TotalA0301: day 3
Hashtag2_TotalA0302: day 5
Hashtag3_TotalA0303: day 7
Hashtag4_TotalA0304: ctrl
 
Contributor(s) Knöpper K, Arampatzi P, Kastenmüller W, Saliba A
Citation(s) 37463581
Submission date May 25, 2022
Last update date Aug 23, 2023
Contact name Antoine-Emmanuel Saliba
E-mail(s) emmanuel.saliba@helmholtz-hzi.de
Phone +49-931-31-81341
Organization name Helmholtz Institute for RNA-based Infection Research
Street address Josef-Schneider-Straße 2 / D15
City Würzburg
ZIP/Postal code 97080
Country Germany
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (2)
GSM6195536 sdLN preDC mRNA
GSM6195537 sdLN preDC ADT
Relations
BioProject PRJNA842392

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE204815_barcodes.tsv.gz 60.4 Kb (ftp)(http) TSV
GSE204815_feature_reference.csv.gz 214 b (ftp)(http) CSV
GSE204815_features.tsv.gz 284.2 Kb (ftp)(http) TSV
GSE204815_matrix.mtx.gz 124.4 Mb (ftp)(http) MTX
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Raw data are available in SRA
Processed data are available on Series record

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