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GEO accession:
Series GSE203583
Query DataSets for GSE203583
Status
Public on May 10, 2023
Title
Sites of transcription initiation drive mRNA isoform selection
Organisms
Drosophila melanogaster
;
Homo sapiens
Experiment type
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37178687
Submission date
May 23, 2022
Last update date
Aug 09, 2023
Contact name
Valérie Hilgers
Organization name
MPI of Immunobiology and Epigenetics
Street address
Stübeweg 51
City
Freiburg
ZIP/Postal code
79108
Country
Germany
Platforms (5)
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GPL24622
MinION (Drosophila melanogaster)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL25244
Illumina NovaSeq 6000 (Drosophila melanogaster)
GPL28354
Sequel (Drosophila melanogaster)
GPL28975
GridION (Homo sapiens)
Samples (69)
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GSM6170878
heads_FLAMseq_1
GSM6170879
heads_FLAMseq_2
GSM6170880
heads_FLAMseq_3
GSM6173951
xmoo1_line_ctrl_1
GSM6173952
xmoo1_line_ctrl_2
GSM6173953
xmoo1_line_ctrl_3
GSM6173954
heads_Isoseq_1
GSM6173955
heads_Isoseq_2
GSM6173956
heads_Isoseq_3
GSM6173957
heads_rep1
GSM6173958
heads_rep2
GSM6173959
ovaries_rep1
GSM6173960
ovaries_rep2
GSM6175083
heads_RNADirect_1
GSM6175084
embryo14_16hrs_RNADirect_1
GSM6175085
embryo14_16hrs_RNADirect_2
GSM6175086
embryo14_16hrs_RNADirect_3
GSM6175087
ovaries_RNADirect_1
GSM6175088
ovaries_RNADirect_2
GSM6175089
ovaries_RNADirect_3
GSM6176519
heads_1DONP_1
GSM6176520
heads_1DONP_2
GSM6176521
heads_1DONP_3
GSM6176522
heads_1DONP_4
GSM6176523
embryo14_16hrs_1DONP_1
GSM6176524
embryo14_16hrs_1DONP_2
GSM6176525
embryo14_16hrs_1DONP_3
GSM6176526
embryo18_20hrs_1DONP_1
GSM6176527
embryo18_20hrs_1DONP_2
GSM6176528
embryo18_20hrs_1DONP_3
GSM6176529
Ovaries_1DONP_1
GSM6176530
Ovaries_1DONP_2
GSM6176531
Ovaries_1DONP_3
GSM6176532
heads_1DONP_nonSizeSelected_5
GSM6176533
heads_1DONP_nonSizeSelected_6
GSM6858547
xmoo1_line_ctrl_1 [1862_21S001280]
GSM6858548
xmoo1_line_ctrl_2 [1862_21S001281]
GSM6858549
xmoo1_line_ctrl_3 [1862_21S001282]
GSM6858550
nej3_embryos_14_16hours_Rep1
GSM6858551
nej3_embryos_14_16hours_Rep2
GSM6858552
nej3_embryos_14_16hours_Rep3
GSM6858553
nej3_embryos_14_16hours_Rep4
GSM6858554
nejEP1179_embryos_14_16hours_Rep1
GSM6858555
nejEP1179_embryos_14_16hours_Rep2
GSM6858556
nejEP1179_embryos_14_16hours_Rep3
GSM6858557
nejEP1179_embryos_14_16hours_Rep4
GSM6858558
w1118_embryos_14_16hours_Rep1
GSM6858559
w1118_embryos_14_16hours_Rep2
GSM6858560
w1118_embryos_14_16hours_Rep3
GSM6858561
w1118_embryos_14_16hours_Rep4
GSM6858562
chmods_Dfd1_16_18hrs_R1
GSM6858563
chmods_Dfd1_16_18hrs_R2
GSM6858564
chmods_ez731_16_18hrs_R1
GSM6858565
chmods_ez731_16_18hrs_R2
GSM6858566
chmods_ez731_16_18hrs_R3
GSM6858567
chmods_psce22_16_18hrs_R1
GSM6858568
chmods_psce22_16_18hrs_R2
GSM6858569
chmods_psch27_16_18hrs_R1
GSM6858570
chmods_psch27_16_18hrs_R2
GSM6858571
chmods_psh27_16_18hrs_R3
GSM6858572
chmods_SppsG8810_16_18hrs_R1
GSM6858573
chmods_SppsG8810_16_18hrs_R2
GSM6858574
chmods_SppsG8810_16_18hrs_R3
GSM6858575
chmods_w1118_16_18hrs_R1
GSM6858576
chmods_w1118_16_18hrs_R2
GSM6858577
chmods_w1118_16_18hrs_R3
GSM6858654
xmoo1_line_ctrl_1_reseq
GSM6858655
xmoo1_line_ctrl_2_reseq
GSM6858656
xmoo1_line_ctrl_3_reseq
This SuperSeries is composed of the following SubSeries:
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GSE203390
Sites of transcription initiation drive mRNA isoform selection [FLAMseq]
GSE203496
Sites of transcription initiation drive mRNA isoform selection [HumanOrganoids]
GSE203497
Sites of transcription initiation drive mRNA isoform selection [PacBio]
GSE203498
Sites of transcription initiation drive mRNA isoform selection [RNA-seq]
GSE203504
Sites of transcription initiation drive mRNA isoform selection [RNADirect]
GSE203582
Sites of transcription initiation drive mRNA isoform selection [cDNANanopore]
GSE221323
Sites of transcription initiation drive mRNA isoform selection [Human_3seq]
GSE221324
Sites of transcription initiation drive mRNA isoform selection [RNAseq2]
Relations
BioProject
PRJNA841485
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE203583_CIA.assembly.allTissues59K.gtf.gz
2.2 Mb
(ftp)
(http)
GTF
GSE203583_IsoAnnotCIA.assembly.allTissues59K.gff3.gz
32.5 Mb
(ftp)
(http)
GFF3
GSE203583_RAW.tar
4.4 Mb
(http)
(custom)
TAR (of CSV)
GSE203583_README.txt
854 b
(ftp)
(http)
TXT
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