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Series GSE203432 Query DataSets for GSE203432
Status Public on Jun 29, 2022
Title Exploring the microbiota pecularity in stool and biopsies of Eosinophilic Granulomatosis with Polyangiitis (EGPA) patients
Organism Homo sapiens
Experiment type Other
Summary Comparing bacteriota between EGPA patients and healthy subjects
Overall design Total DNA was extracted from feces of 29 EGPA patients and 9 healthy controls and from biopsies of 7 EGPA patients. The DNA has been amplified to collect amplicons of variable V3–V4 regions of the bacterial 16s rRNA gene and sequenced with MiSeq (2x250bp) Illumina platform.
Citation(s) 35740247
Submission date May 20, 2022
Last update date Jun 29, 2022
Contact name Matteo Ramazzotti
Organization name University of Florence
Department Experimental and Clinical Biomedical Sciences
Street address viale Morgagni 50
City Firenze
ZIP/Postal code 50134
Country Italy
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (45)
GSM6171879 Bacteriota of stool from patient CH12
GSM6171880 Bacteriota of stool from patient CH14
GSM6171881 Bacteriota of stool from patient CH175
BioProject PRJNA840857

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE203432_dna_sequences_biopsy.fasta.gz 47.1 Kb (ftp)(http) FASTA
GSE203432_dna_sequences_stool.fasta.gz 267.2 Kb (ftp)(http) FASTA
GSE203432_feature_table_biopsy.csv.gz 19.7 Kb (ftp)(http) CSV
GSE203432_feature_table_stool.csv.gz 116.1 Kb (ftp)(http) CSV
GSE203432_taxonomy_biopsy.tsv.gz 17.8 Kb (ftp)(http) TSV
GSE203432_taxonomy_stool.tsv.gz 90.9 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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