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| Status |
Public on May 17, 2023 |
| Title |
m6A RNA methylation orchestrates transcriptional dormancy during paused pluripotency |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
May 12, 2022 |
| Last update date |
May 17, 2023 |
| Contact name |
Evelyne Anne Collignon |
| Organization name |
Lunenfeld-Tanenbaum Research Institute
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| Lab |
Ramalho-Santos lab
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| Street address |
60 Murray Street, Box42,
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| City |
Toronto |
| State/province |
ON |
| ZIP/Postal code |
M5T 3L9 |
| Country |
Canada |
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| Platforms (3) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (58)
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| GSM6134100 |
E14-Mettl3-KO, paused, rep1 |
| GSM6134101 |
E14-WT, FBS, rep2 |
| GSM6134102 |
E14-Mettl3-KO, FBS, rep2 |
| GSM6134103 |
E14-WT, paused, rep2 |
| GSM6134104 |
E14-Mettl3-KO, paused, rep2 |
| GSM6134105 |
E14-WT, FBS, rep3 |
| GSM6134106 |
E14-Mettl3-KO, FBS, rep3 |
| GSM6134107 |
E14-WT, paused, rep3 |
| GSM6134108 |
E14-Mettl3-KO, paused, rep3 |
| GSM6134109 |
FBS, MeRIP input, rep1 |
| GSM6134110 |
FBS, MeRIP input, rep2 |
| GSM6134111 |
FBS, MeRIP input, rep3 |
| GSM6134112 |
Paused, MeRIP input, rep1 |
| GSM6134113 |
Paused, MeRIP input, rep2 |
| GSM6134114 |
Paused, MeRIP input, rep3 |
| GSM6134115 |
FBS, MeRIP m6A-IP, rep1 |
| GSM6134116 |
FBS, MeRIP m6A-IP, rep2 |
| GSM6134117 |
FBS, MeRIP m6A-IP, rep3 |
| GSM6134118 |
Paused, MeRIP m6A-IP, rep1 |
| GSM6134119 |
Paused, MeRIP m6A-IP, rep2 |
| GSM6134120 |
Paused, MeRIP m6A-IP, rep3 |
| GSM6134121 |
FBS, ChIP input, rep1 |
| GSM6134122 |
FBS, ChIP input, rep2 |
| GSM6134123 |
Paused, ChIP input, rep1 |
| GSM6134124 |
Paused, ChIP input, rep2 |
| GSM6134125 |
FBS, ChIP Mettl3 IP, rep1 |
| GSM6134126 |
FBS, ChIP Mettl3 IP, rep2 |
| GSM6134127 |
Paused, ChIP Mettl3 IP, rep1 |
| GSM6134128 |
Paused, ChIP Mettl3 IP, rep2 |
| GSM7135712 |
E14-paused, NT-gRNA, rep1 |
| GSM7135713 |
E14-paused, NT-gRNA, rep2 |
| GSM7135714 |
E14-paused, NT-gRNA, rep3 |
| GSM7135715 |
E14-paused, NT-gRNA, rep4 |
| GSM7135716 |
E14-paused, Mycn-gRNA2, rep1 |
| GSM7135717 |
E14-paused, Mycn-gRNA2, rep2 |
| GSM7135718 |
E14-paused, Mycn-gRNA2, rep3 |
| GSM7135719 |
E14-paused, Mycn-gRNA2, rep4 |
| GSM7135720 |
E14-paused, Mycn-gRNA3, rep1 |
| GSM7135721 |
E14-paused, Mycn-gRNA3, rep2 |
| GSM7135722 |
E14-paused, Mycn-gRNA3, rep3 |
| GSM7135723 |
E14-paused, Mycn-gRNA3, rep4 |
| GSM7135724 |
E14-WT paused, time 0, rep1 |
| GSM7135725 |
E14-Mettl3-KO paused, time 0, rep1 |
| GSM7135726 |
E14-Mettl3-KO paused, time 0, rep2 |
| GSM7135727 |
E14-WT paused, time 1h, rep1 |
| GSM7135728 |
E14-WT paused, time 1h, rep2 |
| GSM7135729 |
E14-Mettl3-KO paused, time 1h, rep1 |
| GSM7135730 |
E14-Mettl3-KO paused, time 1h, rep2 |
| GSM7135731 |
E14-WT paused, time 3h, rep1 |
| GSM7135732 |
E14-Mettl3-KO paused, time 3h, rep1 |
| GSM7135733 |
E14-Mettl3-KO paused, time 3h, rep2 |
| GSM7135734 |
E14-WT paused, time 8h, rep1 |
| GSM7135735 |
E14-WT paused, time 8h, rep2 |
| GSM7135736 |
E14-Mettl3-KO paused, time 8h, rep1 |
| GSM7135737 |
E14-Mettl3-KO paused, time 8h, rep2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE202844 |
m6A RNA methylation orchestrates transcriptional dormancy during paused pluripotency [RNA-seq] |
| GSE202846 |
m6A RNA methylation orchestrates transcriptional dormancy during paused pluripotency [MeRIP-seq] |
| GSE202847 |
m6A RNA methylation orchestrates transcriptional dormancy during paused pluripotency [ChIP-seq] |
| GSE228733 |
m6A RNA methylation orchestrates transcriptional dormancy during paused pluripotency [dCas_RNAseq] |
| GSE228734 |
m6A RNA methylation orchestrates transcriptional dormancy during paused pluripotency [SLAM-seq] |
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| Relations |
| BioProject |
PRJNA837531 |
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