|
| Status |
Public on Jun 22, 2024 |
| Title |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [MutPE] |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Other
|
| Summary |
Analysis of chromatin marks, nascent transcription and mutational profiles at AID-target genes in human cell line and mouse
|
| |
|
| Overall design |
MutPE-seq of human and murine cells in replicates
|
| |
|
| Contributor(s) |
Schoeberl UE, Fitz J, Froussios K, Valieris R, Makharova M, Ourailidis I, Bauer B, Neumann T, Wiedemann E, Mastrovito M, Steininger M, Cantoran Garcia A, Mouquet H, Tojal Da Silva I, Pavri R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 02, 2022 |
| Last update date |
Jun 22, 2024 |
| Contact name |
Maximilian Christian von der Linde |
| E-mail(s) |
maximilian.linde@imp.ac.at, max_vdl@outlook.com
|
| Phone |
+4368181646556
|
| Organization name |
Institute of Molecular Pathology
|
| Lab |
Pavri GRP
|
| Street address |
Campus-vienna-biocenter 1, IMP, Pavri GRP
|
| City |
Vienna |
| State/province |
Vienna |
| ZIP/Postal code |
1030 |
| Country |
Austria |
| |
|
| Platforms (2) |
|
| Samples (36)
|
|
| This SubSeries is part of SuperSeries: |
| GSE202042 |
High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks |
|
| Relations |
| BioProject |
PRJNA834077 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE202039_182901_182900.sub.point.bedGraph.gz |
5.1 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182903_182902.sub.point.bedGraph.gz |
5.1 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182905_182904.sub.point.bedGraph.gz |
5.5 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182907_182906.sub.point.bedGraph.gz |
5.6 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182909_182908.sub.point.bedGraph.gz |
5.6 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182911_182910.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182915_182914.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182917_182916.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182919_182918.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182925_182924.sub.point.bedGraph.gz |
5.3 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_182927_182926.sub.point.bedGraph.gz |
5.3 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86745_B18_AIDER_s1_86736_B18_AIDKO_s1.sub.point.bedGraph.gz |
5.5 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86745_B18_AIDER_s1_86744_B18_AIDER_r1.sub.point.bedGraph.gz |
5.5 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86747_B18_AIDER_s2_86737_B18_AIDKO_s2.sub.point.bedGraph.gz |
5.5 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86747_B18_AIDER_s2_86746_B18_AIDER_r2.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86756_B18_GCB1_86748_B18_G_e1.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86756_B18_GCB1_86758_B18_AIDKO_GCB1.sub.point.bedGraph.gz |
5.5 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86757_B18_GCB2_86749_B18_G_e2.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86757_B18_GCB2_86759_B18_AIDKO_GCB2.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86764_B18_GCB3_86758_B18_AIDKO_GCB1.sub.point.bedGraph.gz |
5.4 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_86765_B18_GCB4_86759_B18_AIDKO_GCB2.sub.point.bedGraph.gz |
5.5 Kb |
(ftp)(http) |
BEDGRAPH |
| GSE202039_RAW.tar |
220.0 Kb |
(http)(custom) |
TAR (of BEDGRAPH) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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