NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE20107 Query DataSets for GSE20107
Status Public on Mar 01, 2010
Title Phenotypic plasticity in the pea aphid Acyrthosiphon pisum: miRNA sequencing
Organism Acyrthosiphon pisum
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Bioinformatic prediction, deep sequencing of microRNA and expression analysis during phenotypic plasticity in the pea aphid acyrthosiphon pisum
We developed high throughput Solexa sequencing and bioinformatic analyses of the genome of the pea aphid Acyrthosiphon pisum in order to identify the first miRNAs from a hemipteran insect. By combining these methods we identified 155 miRNAs including 56 conserved and 99 new miRNAs. Moreover, we investigated the regulation of these miRNAs in different alternative morphs of the pea aphid by analysing the expression of miRNAs across the switch of reproduction mode.
 
Overall design deep sequencing of small RNAs from parthenogenetic Acyrthosiphon pisum
 
Contributor(s) Walsh T, Edwards O, Shigenobu S
Citation(s) 20444247
Submission date Jan 29, 2010
Last update date May 15, 2019
Contact name Stephanie Jaubert
E-mail(s) stephanie.jaubert@rennes.inra.fr
Organization name INRA
Lab UMR BiO3P
Street address domaine de la Motte
City Rennes
ZIP/Postal code 35653
Country France
 
Platforms (1)
GPL9994 Illumina Genome Analyzer (Acyrthosiphon pisum)
Samples (1)
GSM502519 small RNAs-parthenogenetic
This SubSeries is part of SuperSeries:
GSE20110 Phenotypic plasticity in the pea aphid Acyrthosiphon pisum
Relations
SRA SRP001987
BioProject PRJNA129787

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE20107_RAW.tar 7.3 Mb (http)(custom) TAR (of FA)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap