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GEO accession:
Series GSE201064
Query DataSets for GSE201064
Status
Public on Oct 24, 2022
Title
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination
Organisms
Escherichia coli
;
Homo sapiens
;
Mus musculus
;
synthetic construct
Experiment type
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36593412
Submission date
Apr 19, 2022
Last update date
Dec 01, 2023
Contact name
Shun Liu
Organization name
University of Chicago
Department
Chemistry
Lab
Chuan He Lab
Street address
929 E. 57th. Street
City
Chicago
State/province
IL
ZIP/Postal code
60637
Country
USA
Platforms (5)
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GPL15520
Illumina MiSeq (Homo sapiens)
GPL16085
Illumina MiSeq (Escherichia coli)
GPL17769
Illumina MiSeq (synthetic construct)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (83)
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GSM6049833
methylated_RNA1#
GSM6049834
methylated_RNA1#_TadA8.20
GSM6049835
methylated_RNA2#
GSM6049836
methylated_RNA2#_TadA8.20
GSM6049837
methylated_E. coli tRNA
GSM6049838
methylated_E. coli tRNA_TadA8.20
GSM6049839
methylated_E. coli tRNA_WTTadA
GSM6049840
unmethylated_RNA1#
GSM6049841
unmethylated_RNA1#_TadA8.20
GSM6049842
unmethylated_RNA2#
GSM6049843
unmethylated_RNA2#_TadA8.20
GSM6049844
unmethylated_E. coli tRNA
GSM6049845
unmethylated_E. coli tRNA_TadA8.20
GSM6049846
unmethylated_E. coli tRNA_WTTadA
GSM6049847
HeLa_ACTB_no dilution
GSM6049848
HeLa_ACTB_10 fold dilution
GSM6049849
HeLa_ACTB_100 fold dilution
GSM6049850
HeLa_ACTB_1000 fold dilution
GSM6049851
HeLa_EIF2A_no dilution
GSM6049852
HeLa_EIF2A_10 fold dilution
GSM6049853
HeLa_EIF2A_100 fold dilution
GSM6049854
HeLa_EIF2A_1000 fold dilution
GSM6049855
HeLa_ACTB_0.25 ng_total RNA
GSM6049856
HeLa_ACTB_2.5 ng_total RNA
GSM6049857
HeLa_ACTB_25 ng_total RNA
GSM6049858
HeLa_EIF2A_0.25 ng_total RNA
GSM6049859
HeLa_EIF2A_2.5 ng_total RNA
GSM6049860
HeLa_EIF2A_25 ng_total RNA
GSM6049861
HeLa_ACTB
GSM6049862
HeLa_CAND1
GSM6049863
HeLa_CIAO1
GSM6049864
HeLa_CLCN3
GSM6049865
HeLa_CXCR4
GSM6049866
HeLa_EIF2A
GSM6049867
HeLa_GRWD1
GSM6049868
HeLa_H2AFX
GSM6049869
HeLa_HDAC2
GSM6049870
HeLa_HOXB7
GSM6049871
HeLa_ILF3
GSM6049872
HeLa_JUNB
GSM6049873
HeLa_MALAT1
GSM6049874
HeLa_MYC
GSM6049875
HeLa_OGT
GSM6049876
HeLa_PPIB
GSM6049877
HeLa_SLC7A5
GSM6049878
HeLa_TPT1
GSM6049879
HeLa_TPX2
GSM6049880
HeLa_ZBED5
GSM6049881
IVT_ACTB
GSM6049882
IVT_CAND1
GSM6049883
IVT_CIAO1
GSM6049884
IVT_CLCN3
GSM6049885
IVT_CXCR4
GSM6049886
IVT_EIF2A
GSM6049887
IVT_HDAC2
GSM6049888
IVT_HOXB7
GSM6049889
IVT_ILF3
GSM6049890
IVT_MALAT1
GSM6049891
IVT_MYC
GSM6049892
IVT_OGT
GSM6049893
IVT_SLC7A5
GSM6049894
IVT_TPT1
GSM6049895
IVT_TPX2
GSM6049896
IVT_ZBED5
GSM6463599
HeLa_polyA_WT_FTO-_rep1
GSM6463600
HeLa_polyA_WT_FTO-_rep2
GSM6463601
HeLa_polyA_WT_FTO-_rep3
GSM6463602
HeLa_polyA_WT_FTO+_rep1
GSM6463603
HeLa_polyA_WT_FTO+_rep2
GSM6463604
HeLa_polyA_WT_FTO+_rep3
GSM6463605
HeLa_polyA_WT_IVT_rep1
GSM6463606
HeLa_polyA_WT_IVT_rep2
GSM6463607
HeLa_polyA_WT_IVT_rep3
GSM6463608
mESC_polyA_WT_FTO-_rep1
GSM6463609
mESC_polyA_WT_FTO-_rep2
GSM6463610
mESC_polyA_WT_FTO+_rep1
GSM6463611
mESC_polyA_WT_FTO+_rep2
GSM6463612
mESC_polyA_WT_IVT_rep1
GSM6463613
mESC_polyA_WT_IVT_rep2
GSM6463614
mESC_polyA_Ctrl_FTO-_rep1
GSM6463615
mESC_polyA_Ctrl_FTO+_rep1
GSM6463616
mESC_polyA_M3cko_FTO-_rep1
GSM6463617
mESC_polyA_M3cko_FTO+_rep1
This SuperSeries is composed of the following SubSeries:
GSE201062
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination [probes_assay]
GSE201063
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination [site_specific_quantification]
GSE211303
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination [eTAM-seq]
Relations
BioProject
PRJNA828162
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