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GEO accession:
Series GSE200751
Query DataSets for GSE200751
Status
Public on Jun 09, 2023
Title
MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts.
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37605008
Submission date
Apr 13, 2022
Last update date
Sep 20, 2023
Contact name
Dan Filipescu
E-mail(s)
dan.filipescu@mssm.edu
Phone
2128249265
Organization name
Icahn School of Medicine at Mount Sinai
Department
Oncological Sciences
Lab
Emily Bernstein
Street address
1470 Madison Ave
City
New York
State/province
New York
ZIP/Postal code
10029
Country
USA
Platforms (2)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (61)
Less...
More...
GSM6042770
Mouse # 64727 melanoma RNA-seq
GSM6042771
Mouse # 64747 melanoma RNA-seq
GSM6042772
Mouse # 64799 melanoma RNA-seq
GSM6042773
Mouse # 64803 melanoma RNA-seq
GSM6042774
Mouse # 64805 melanoma RNA-seq
GSM6042775
Mouse # 64808 melanoma RNA-seq
GSM6042776
Mouse # 64660 melanoma RNA-seq
GSM6042777
Mouse # 64661 melanoma RNA-seq
GSM6042778
Mouse # 64982 melanoma RNA-seq
GSM6042779
Mouse # 65018 melanoma RNA-seq
GSM6042780
Mouse # 65020 melanoma RNA-seq
GSM6042781
Mouse # 65041 melanoma RNA-seq
GSM6042782
Mouse # 65662 tumor-infiltrating CD8 RNA-seq
GSM6042783
Mouse # 65664 tumor-infiltrating CD8 RNA-seq
GSM6042784
Mouse # 65666 tumor-infiltrating CD8 RNA-seq
GSM6042785
Mouse # 65668 tumor-infiltrating CD8 RNA-seq
GSM6042786
Mouse # 65674 tumor-infiltrating CD8 RNA-seq
GSM6042787
Mouse # 65675 tumor-infiltrating CD8 RNA-seq
GSM6042788
Mouse # 65677 tumor-infiltrating CD8 RNA-seq
GSM6042789
Mouse # 65678 tumor-infiltrating CD8 RNA-seq
GSM6042790
Mouse # 66561 CAF RNA-seq
GSM6042791
Mouse # 66562 CAF RNA-seq
GSM6042792
Mouse # 66565 CAF RNA-seq
GSM6042793
Mouse # 66566 CAF RNA-seq
GSM6042794
Mouse # 66554 CAF RNA-seq
GSM6042795
Mouse # 66555 CAF RNA-seq
GSM6042796
Mouse # 66558 CAF RNA-seq
GSM6042797
Mouse # 66559 CAF RNA-seq
GSM6042798
iDF WT serum 0 min replicate 1 RNA-seq
GSM6042799
iDF WT serum 0 min replicate 2 RNA-seq
GSM6042800
iDF WT serum 30 min replicate 1 RNA-seq
GSM6042801
iDF WT serum 30 min replicate 2 RNA-seq
GSM6042802
iDF dKO serum 0 min replicate 1 RNA-seq
GSM6042803
iDF dKO serum 0 min replicate 2 RNA-seq
GSM6042804
iDF dKO serum 30 min replicate 1 RNA-seq
GSM6042805
iDF dKO serum 30 min replicate 2 RNA-seq
GSM6042890
Mouse # 66620 CAF ATAC-seq
GSM6042891
Mouse # 66626 CAF ATAC-seq
GSM6042892
Mouse # 66623 CAF ATAC-seq
GSM6042893
Mouse # 66624 CAF ATAC-seq
GSM6042894
CAF culture from mouse # 66391 H3K27ac ChIP-seq
GSM6042895
CAF culture from mouse # 66383 H3K27ac ChIP-seq
GSM6042896
CAF culture genomic DNA input for ChIP-seq
GSM6042897
CAF culture from mouse # 66391 macroH2A1 CUT&RUN prior to serum stimulation
GSM6042898
CAF culture from mouse # 66391 macroH2A1 CUT&RUN 30 minutes after serum stimulation
GSM6042899
CAF culture from mouse # 66391 IgG background for CUT&RUN
GSM6042900
H3K27ac ChIP-seq in iDF dKO cells
GSM6042901
H3K27ac ChIP-seq in iDF WT cells
GSM6042902
iDF culture genomic DNA input for ChIP-seq
GSM7164976
Mouse #66193 scRNA-seq
GSM7164977
Mouse #66208 scRNA-seq
GSM7164978
Mouse #66691 scRNA-seq
GSM7164979
Mouse #66675 scRNA-seq
GSM7164980
Mouse #19332 scRNA-seq
GSM7164981
Mouse #19323 scRNA-seq
GSM7164982
CAF culture from mouse # 66391 pcMicro-C replicate 1
GSM7164983
CAF culture from mouse # 66391 pcMicro-C replicate 2
GSM7164984
CAF culture from mouse # 66383 pcMicro-C replicate 1
GSM7164985
CAF culture from mouse # 66383 pcMicro-C replicate 2
GSM7164986
Mouse #19333 spatial transcriptomics
GSM7164987
Mouse #19331 spatial transcriptomics
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE200725
MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts [RNA-seq]
GSE200734
MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts [epigenomics]
GSE229530
MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts [scRNA-seq]
GSE229531
MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts [3D chromatin]
GSE229532
MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts [spatial transcriptomics]
Relations
BioProject
PRJNA826473
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Format
SOFT formatted family file(s)
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TXT
Supplementary file
Size
Download
File type/resource
GSE200751_RAW.tar
2.4 Gb
(http)
(custom)
TAR (of BW, CSV, H5, JSON, MTX, PNG, SF, TSV)
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