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Series GSE200515 Query DataSets for GSE200515
Status Public on Jun 01, 2022
Title Tumor-associated Tregs obstruct anti-tumor immunity by promoting T cell dysfunction and restricting clonal diversity in tumor-infiltrating CD8+ T cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We investigated how accumulation of Tregs contributes to T cell dysfunction and clonal constriction of tumor-infiltrating CD8+ T cells. Resected melanoma atissues from tumor-bearing mice were analyzed. The clonal diversity of tumor-associated CD8+ T cells were evaluated by single-cell TCR sequencing respectively, at early or advanced tumor stages or under Treg depletion conditions. TCR-sequencing revealed a clonal shrinkage of tumor-infiltrating CD8+ T cells as tumor progressed, which was associated with reduced survival profile concomitant to increasing Treg proportions.
 
Overall design CD8+ T cells sorted from melanoma tissues in B16-F10 incoculated mice were processed for single-cell TCR sequencing
 
Contributor(s) Adeegbe D, Noyes D, Semidey-Hurtado J
Citation(s) 35618289
Submission date Apr 08, 2022
Last update date Mar 08, 2024
Contact name Dennis Adeegbe
E-mail(s) Dennis.Adeegbe@moffitt.org
Organization name Moffitt Cancer Center
Department Immunology
Street address 13131 USF Magnolia Drive
City Tampa
State/province FL
ZIP/Postal code 33612
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (17)
GSM6035347 B16-F10-01-Tumor-VDJ
GSM6035348 B16-F10-03-Tumor-VDJ
GSM6035349 B16-F10-05-Tumor-VDJ
Relations
BioProject PRJNA824860

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200515_RAW.tar 2.1 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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